early conceptus |
embryo ectoderm |
embryo endoderm |
embryo mesoderm |
embryo mesenchyme |
extraembryonic component |
alimentary system |
auditory system |
branchial arches |
cardiovascular system |
connective tissue |
endocrine system |
exocrine system |
hemolymphoid system |
integumental system |
limbs |
liver and biliary system |
musculoskeletal system |
nervous system |
olfactory system |
reproductive system |
respiratory system |
urinary system |
visual system |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Transcription Start Site | Location | Distance from Gene 5'-end |
| Tssr48451 | Chr5:119807941-119807981 (+) | -773 bp |
| Tssr48452 | Chr5:119808008-119808019 (+) | -720 bp |
| Tssr48453 | Chr5:119808465-119808472 (+) | -265 bp |
| Tssr48454 | Chr5:119808723-119808741 (+) | -2 bp |
| Tssr48455 | Chr5:119808764-119808769 (+) | 33 bp |
| Tssr1615 | Chr5:119808777-119808786 (+) | 48 bp |
| Tssr1616 | Chr5:119808791-119808795 (+) | 59 bp |
| Tssr48456 | Chr5:119808863-119808866 (+) | 131 bp |
| Tssr48457 | Chr5:119808890-119808901 (+) | 162 bp |
| Tssr48458 | Chr5:119809037-119809048 (+) | 309 bp |
| Tssr1617 | Chr5:119809049-119809056 (+) | 319 bp |
| Tssr48459 | Chr5:119809076-119809105 (+) | 357 bp |
| Tssr48460 | Chr5:119809147-119809156 (+) | 418 bp |
| Tssr48461 | Chr5:119809225-119809227 (+) | 492 bp |
| Tssr48462 | Chr5:119809318-119809338 (+) | 594 bp |
| Tssr48463 | Chr5:119809502-119809517 (+) | 776 bp |
| Tssr48464 | Chr5:119809655-119809678 (+) | 933 bp |
| Tssr48465 | Chr5:119809717-119809727 (+) | 988 bp |
| Tssr48466 | Chr5:119809748-119809764 (+) | 1,022 bp |
| Tssr48467 | Chr5:119809893-119809929 (+) | 1,177 bp |
| Tssr48468 | Chr5:119818286-119818301 (+) | 9,560 bp |
| Tssr48469 | Chr5:119818331-119818352 (+) | 9,608 bp |
| Tssr48470 | Chr5:119818433-119818488 (+) | 9,727 bp |
| Tssr48471 | Chr5:119819077-119819078 (+) | 10,344 bp |
| Tssr1618 | Chr5:119822595-119822610 (+) | 13,869 bp |
| QTL | Genetic Location* | Genome Location (GRCm39) | Reference | QTL Note |
| Eae39r | Chr5, syntenic | J:295093 | Development of autoimmune diseases is the result of a complex interplay between hereditary and environmental factors, with multiple genes contributing to the pathogenesis in human disease and in experimental models for disease. The genetic locus Eae39, located on mouse chromosome 5, was previously linked to experimental autoimmune encephalomyelitis (EAE), an experimental model for multiple sclerosis. Subsequently, it was also shown to influence CIA development and severity [8, 10]. Eae39 congenic and sub-congenic lines were bred on the genetic background of the B10.RIII strain [7]. In the present study, the Eae39 sub-locus, Eae39r, was investigated. This locus comprises four protein-coding genes: Mediator complex subunit 13-like (Med13l), T-box transcription factor 3 (Tbx3), T-box transcription factor 5 (Tbx5), and Probable RNA-binding protein 19 (Rbm19). The authors previously showed that genetic polymorphisms in Med13L do not affect the immune phenotype in BR.RIIIS/J-Eae39r congenic mice and are predicted to be non-disease associated (Sardar et al., 2018). BR.RIIIS/J-Eae39r congenic mice were produced by introduction of the Eae39r fragment from the CIA-resistant RIIIS/J donor strain, purchased from Jackson Laboratory (Bar Harbor, ME, USA), to the CIA susceptible B10.RIII background strain, provided by J. Klein (Tbingen, Germany), as previously described [8]. The sub-congenic line BR.RIIIS/J-Eae39r2 was produced by further inter-crossing heterozygous BR.RIIIS/J-Eae39r mice. Purified genomic DNA was used for genotyping by high-resolution melting (HRM) SNP genotyping for rs33583463 (5:118596773 bp; mouse genome assembly GRCm38) and rs29824716 (5:120043597 bp; mouse genome assembly GRCm38). Gene expression studies have revealed differential expression of Tbx3 in B cells, where low expression was accompanied by a higher B cell response upon B cell receptor stimulation in vitro. Furthermore, we showed that serum TBX3 levels rise concomitantly with increasing severity of CIA. From these results, the authors suggest that TBX3 is a novel factor important for the regulation of gene transcription in the immune system and that genetic polymorphisms, resulting in lower expression of Tbx3, are contributing to a more severe form of CIA and high titers of autoantibodies. They also propose TBX3 as a putative diagnostic biomarker for rheumatoid arthritis. |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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