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Snrpn
Gene Detail
Symbol

Name
ID
Snrpn
small nuclear ribonucleoprotein N
MGI:98347
Synonyms
2410045I01Rik, MGC:18604, MGC:30325, Peg4, Pwcr1
Feature Type
protein coding gene
Genetic Map
Chromosome 7
34.04 cM
Detailed Genetic Map ± 1 cM


Mapping data(17)
Sequence Map
Chr7:59982495-60005111 bp, - strand
From VEGA annotation of GRCm38

  22617 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:68297  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: small nuclear ribonucleoprotein associated protein, SmB/SmN types

Human
homologs
Human Homolog   SNRPN, small nuclear ribonucleoprotein polypeptide N
NCBI Gene ID 6638
neXtProt AC  NX_P63162
Human Synonyms  HCERN3, PWCR, RT-LI, SM-D, sm-N, SMN, SNRNP-N, SNURF-SNRPN
Human Chr (Location)  15q11.2; chr15:24823647-24978582 (+)  GRCh38
Disease Associations  (2) Diseases Associated with Human SNRPN
Mutations,
alleles, and
phenotypes
All mutations/alleles(14) : Targeted(13) Transgenic(1)
Genomic Mutations involving Snrpn (3)
Incidental mutations (data from Mutagenetix , APF )
 
Homozygotes for targeted intragenic deletions are phenotypically normal. Deletions that also encompass neighboring genes on the paternal chromosome exhibit growth retardation, hypotonia, and high mortality.
 
Human Diseases Modeled in Mice Using Snrpn (2)    Mutations Annotated to Human Diseases (5)   
Interactions
Snrpn interacts with 141 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Component nucleus, U1 snRNP, ...
External Resources: FuncBase
Expression
Literature Summary: (35 records)
Data Summary: Results (259)    Tissues (33)    Images (31)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 221
Northern blot 23
RT-PCR 15
cDNA source data(10)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(31) Genomic(9) cDNA(14) Primer pair(7) Other(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000042349 (Evidence)
Ensembl Gene ModelENSMUSG00000000948 (Evidence), ENSMUSG00000102252 (Evidence)
Entrez Gene20646 (Evidence)
Consensus CDS ProjectCCDS39974.1
International Mouse Knockout Project StatusSnrpn
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000042349 VEGA Gene Model | MGI Sequence Detail 22617 C57BL/6J ±  kb
transcript OTTMUST00000111612 VEGA | MGI Sequence Detail 1932 Not Applicable 
polypeptide OTTMUSP00000062525 VEGA | MGI Sequence Detail 240 Not Applicable 

For the selected sequences
All sequences(50) RefSeq(6)
Polymorphisms
All PCR and RFLP(7) : PCR(1) RFLP(6) SNPs within 2kb(1873 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000015349 small nuclear ribonucleoprotein-associated protein N
References
(Earliest) J:2311 Gerrelli D, et al., Cloning and sequencing of a mouse embryonal carcinoma cell mRNA encoding the tissue specific RNA splicing protein SmN. Nucleic Acids Res. 1991 Dec 11;19(23):6642
(Latest) J:217174 Nakagaki A, et al., Imprinting analysis of the mouse chromosome 7C region in DNMT1-null embryos. Gene. 2014 Dec 10;553(1):63-8
All references(118)
Disease annotation references (4)
Other
accession IDs
MGD-MRK-14477, MGI:1923808

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/17/2015
MGI 5.21
The Jackson Laboratory