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Ptma
Gene Detail
 Symbol
Name
ID
Ptma
prothymosin alpha
MGI:97803
Synonyms Thym
Feature Type protein coding gene
Genetic Map
Chromosome 1
43.96 cM, cytoband C5
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr1:86526726-86530712 bp, + strand
From VEGA annotation of GRCm38

  3987 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:137217  Vertebrate Homology Class
2 mouse

Protein SuperFamily: prothymosin alpha
Gene Tree: Ptma

Mutations,
alleles, and
phenotypes
All mutations/alleles(48) : Gene trapped(46) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ptma interacts with 189 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process histone exchange
Component nucleus
Function histone binding
External Resources: FuncBase
Expression
Literature Summary: (10 records)
Data Summary: Results (91)    Tissues (73)    Images (13)
Theiler Stages: 9, 11, 13, 15, 17, 19, 20, 22, 23, 24, 28
Assay TypeResults
RNA in situ 84
RT-PCR 1
RNase protection 6
cDNA source data(33)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(35) cDNA(34) Primer pair(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000048097 (Evidence)
Ensembl Gene ModelENSMUSG00000026238 (Evidence)
Entrez Gene19231 (Evidence)
DFCITC1573637
DoTSDT.101361400, DT.102542803, DT.102559158, DT.91509017, DT.94217699, DT.94217764, DT.94217776
NIA Mouse Gene IndexU035234, U045023, U093823, U117066
PDB2Z32
Consensus CDS ProjectCCDS35649.1
International Mouse Knockout Project StatusPtma
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000048097 VEGA Gene Model | MGI Sequence Detail 3987 C57BL/6J ±  kb
transcript OTTMUST00000123575 VEGA | MGI Sequence Detail 604 Not Applicable 
polypeptide OTTMUSP00000067448 VEGA | MGI Sequence Detail 145 Not Applicable 

For the selected sequences
All sequences(62) RefSeq(2) UniProt(6)
Polymorphisms SNPs within 2kb(13 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004931 Prothymosin/parathymosin
Protein Ontology PR:000013436 prothymosin alpha
References (Earliest) J:11117 Schmidt G, et al., Nucleotide sequence of the murine prothymosin alpha cDNA and its deduced primary and secondary protein structure. Biochim Biophys Acta. 1991 Mar 26;1088(3):442-4
(Latest) J:161326 George EM, et al., Prothymosin alpha is a component of a linker histone chaperone. FEBS Lett. 2010 Jul 2;584(13):2833-6
All references(46)
Other
accession IDs
MGD-MRK-13671, MGD-MRK-15105

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory