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Cchcr1 Gene Detail
Summary
  • Symbol
    Cchcr1
  • Name
    coiled-coil alpha-helical rod protein 1
  • Synonyms
    Hcr, MGC:28303
  • Feature Type
    protein coding gene
  • IDs
    MGI:2385321
    NCBI Gene: 240084
  • Gene Overview
    MyGene.info: CCHCR1
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:35517100-35531015 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 18.69 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2385321
protein coding gene Chr17:35517039-35531015 (.)
129S1/SvImJ MGP_129S1SvImJ_G0023642
protein coding gene Chr17:35685549-35703038 (+)
A/J MGP_AJ_G0023597
protein coding gene Chr17:34587925-34603318 (+)
AKR/J MGP_AKRJ_G0023567
protein coding gene Chr17:34990460-35007712 (+)
BALB/cJ MGP_BALBcJ_G0023602
protein coding gene Chr17:34714789-34731108 (+)
C3H/HeJ MGP_C3HHeJ_G0023368
protein coding gene Chr17:35458780-35472815 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024044
protein coding gene Chr17:37150459-37164374 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021522
protein coding gene Chr17:32288982-32302995 (+)
CAST/EiJ MGP_CASTEiJ_G0022859
protein coding gene Chr17:35559332-35574285 (+)
CBA/J MGP_CBAJ_G0023346
protein coding gene Chr17:38694393-38708572 (+)
DBA/2J MGP_DBA2J_G0023470
protein coding gene Chr17:33902537-33916378 (+)
FVB/NJ MGP_FVBNJ_G0023441
protein coding gene Chr17:33692611-33707820 (+)
LP/J MGP_LPJ_G0023550
protein coding gene Chr17:36071828-36087425 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023462
protein coding gene Chr17:37502437-37519828 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024087
protein coding gene Chr17:35328118-35341758 (+)
PWK/PhJ MGP_PWKPhJ_G0022610
protein coding gene Chr17:32754638-32769888 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022429
protein coding gene Chr17:33364797-33378935 (+)
WSB/EiJ MGP_WSBEiJ_G0022925
protein coding gene Chr17:35459220-35474318 (+)



Homology
more
  • Human Ortholog
    CCHCR1, coiled-coil alpha-helical rod protein 1
  • Vertebrate Orthologs
    8
  • Human Ortholog
    CCHCR1, coiled-coil alpha-helical rod protein 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C6orf18, HCR, pg8, SBP
  • Links
    NCBI Gene ID: 54535
    neXtProt AC: NX_Q8TD31
    UniProt: Q8TD31

  • Chr Location
    6p21.33; chr6:31142439-31158238 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000040312 Ensembl Gene Model | MGI Sequence Detail 13916 C57BL/6J ±  kb
transcript ENSMUST00000173903 Ensembl | MGI Sequence Detail 3054 Not Applicable  
polypeptide ENSMUSP00000133407 Ensembl | MGI Sequence Detail 867 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR009800 Coiled-coil alpha-helical rod protein 1
Molecular
Reagents
less
  • All nucleic 25
    cDNA 25

    Microarray probesets 3
References
more
  • Summaries
    All 29
    Developmental Gene Expression 2
    Gene Ontology 6
    Phenotypes 3
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:217575 Ling YH, et al., CCHCR1 interacts with EDC4, suggesting its localization in P-bodies. Exp Cell Res. 2014 Sep 10;327(1):12-23

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory