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Cchcr1
Gene Detail
 Symbol
Name
ID
Cchcr1
coiled-coil alpha-helical rod protein 1
MGI:2385321
Synonyms Hcr, MGC:28303
Feature Type protein coding gene
Genetic Map
Chromosome 17
18.69 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr17:35517100-35531015 bp, + strand
From VEGA annotation of GRCm38

  13916 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10396  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Gene Tree: Cchcr1

Human
homologs
Human Homolog CCHCR1, coiled-coil alpha-helical rod protein 1
NCBI Gene ID 54535
neXtProt AC  NX_Q8TD31
Human Synonyms  C6orf18, HCR, SBP
Human Chr (Location)  6p21.3; chr6:31142439-31158238 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(7) Targeted(1)
Genomic Mutations involving Cchcr1 (1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Cchcr1 interacts with 34 markers (Mir22, Mir23a, Mir25, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process cell differentiation, multicellular organismal development, ...
Component centriole, cytoplasm, ...
Function protein binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (52)    Tissues (7)    Images (23)
Theiler Stages: 22, 23
Assay TypeResults
RNA in situ 52
cDNA source data(24)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(24) cDNA(24)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000037236 (Evidence)
Ensembl Gene ModelENSMUSG00000040312 (Evidence)
Entrez Gene240084 (Evidence)
UniGene49544
DFCITC1583337, TC1633870, TC1679107
DoTSDT.40142499, DT.91411508, DT.99726534
NIA Mouse Gene IndexU017907
Consensus CDS ProjectCCDS50090.1
International Mouse Knockout Project StatusCchcr1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037236 VEGA Gene Model | MGI Sequence Detail 13916 C57BL/6J ±  kb
transcript OTTMUST00000096019 VEGA | MGI Sequence Detail 3054 Not Applicable 
polypeptide OTTMUSP00000053606 VEGA | MGI Sequence Detail 867 Not Applicable 

For the selected sequences
All sequences(46) RefSeq(2) UniProt(3)
Polymorphisms SNPs within 2kb(106 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009800 Alpha helical coiled-coil rod
Protein Ontology PR:000005108 coiled-coil alpha-helical rod protein 1
References (Earliest) J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(31)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/23/2014
MGI 5.18
The Jackson Laboratory