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Vstm2a Gene Detail
Summary
  • Symbol
    Vstm2a
  • Name
    V-set and transmembrane domain containing 2A
  • Synonyms
    9330184N17Rik, MGC:38877, Vstm2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2384826
    NCBI Gene: 211739
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:16257742-16284551 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 8.89 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    787 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2384826
protein coding gene Chr11:16257724-16427310 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018050
protein coding gene Chr11:13632306-13805143 (+)
A/J MGP_AJ_G0018023
protein coding gene Chr11:13165700-13334634 (+)
AKR/J MGP_AKRJ_G0017987
protein coding gene Chr11:13643496-13812140 (+)
BALB/cJ MGP_BALBcJ_G0017991
protein coding gene Chr11:13274960-13436241 (+)
C3H/HeJ MGP_C3HHeJ_G0017804
protein coding gene Chr11:13553160-13733156 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018443
protein coding gene Chr11:14184296-14376060 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016101
protein coding gene Chr11:12383516-12540827 (+)
CAST/EiJ MGP_CASTEiJ_G0017366
protein coding gene Chr11:13558331-13721692 (+)
CBA/J MGP_CBAJ_G0017779
protein coding gene Chr11:15000319-15201691 (+)
DBA/2J MGP_DBA2J_G0017889
protein coding gene Chr11:13141822-13318534 (+)
FVB/NJ MGP_FVBNJ_G0017881
protein coding gene Chr11:12950171-13122835 (+)
LP/J MGP_LPJ_G0017960
protein coding gene Chr11:13795835-13959718 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017907
protein coding gene Chr11:15445412-15626734 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018484
protein coding gene Chr11:13716489-13878429 (+)
PWK/PhJ MGP_PWKPhJ_G0017146
protein coding gene Chr11:13141270-13300535 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016943
protein coding gene Chr11:13506189-13660596 (+)
WSB/EiJ MGP_WSBEiJ_G0017420
protein coding gene Chr11:13399504-13580969 (+)



Homology
more
  • Human Ortholog
    VSTM2A, V-set and transmembrane domain containing 2A
  • Vertebrate Orthologs
    8
  • Human Ortholog
    VSTM2A, V-set and transmembrane domain containing 2A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    VSTM2
  • Links
    NCBI Gene ID: 222008
    neXtProt AC: NX_Q8TAG5
    UniProt: Q8TAG5

  • Chr Location
    7p11.2; chr7:54542064-54571080 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 211739 NCBI Gene Model | MGI Sequence Detail 26810 C57BL/6J ±  kb
transcript NM_001363461 RefSeq | MGI Sequence Detail 3749 C57BL/6  
polypeptide Q8R0A6 UniProt | EBI | MGI Sequence Detail 236 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 5
Other
Accession IDs
less
MGI:2444299
References
more
  • Summaries
    All 29
    Developmental Gene Expression 5
    Gene Ontology 4
    Phenotypes 3
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:239160 Secco B, et al., Amplification of Adipogenic Commitment by VSTM2A. Cell Rep. 2017 Jan 03;18(1):93-106

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory