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Kcnq1ot1
Gene Detail
Symbol

Name
ID
Kcnq1ot1
KCNQ1 overlapping transcript 1
MGI:1926855
Synonyms
Kvlqt1-as, Lit1, Tssc8
Feature Type
unclassified non-coding RNA gene
Genetic Map
Chromosome 7
88.15 cM
Detailed Genetic Map ± 1 cM


Mapping data(8)
Sequence Map
Chr7:143212155-143296549 bp, - strand
From VEGA annotation of GRCm38

  84395 bp   ±  kb flank

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Mouse Genome Browser
Mutations,
alleles, and
phenotypes
All mutations/alleles(15) : Gene trapped(6) Targeted(9)
 
Mice heterozygous for any of several independently generated targeted alleles exhibit abnormal imprinting and may display a growth deficiency.
 
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process gene silencing, hypermethylation of CpG island, ...
Function chromatin binding, protein binding
External Resources: FuncBase
Expression
Literature Summary: (22 records)
Data Summary: Results (51)    Tissues (7)    Images (4)    Tissue x Stage Matrix (view)
Assay TypeResults
RT-PCR 51
cDNA source data(21)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(31) Genomic(1) cDNA(22) Primer pair(8)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000046380 (Evidence)
Entrez Gene63830 (Evidence)
International Mouse Knockout Project StatusKcnq1ot1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000046380 VEGA Gene Model | MGI Sequence Detail 84395 C57BL/6J ±  kb
transcript OTTMUST00000120849 VEGA | MGI Sequence Detail 84395 Not Applicable 

For the selected sequences
All sequences(33) RefSeq(1)
Polymorphisms
PCR(1) : SNPs within 2kb(495 from dbSNP Build 137)
References
(Earliest) J:10529 Bastian H, et al., A murine even-skipped homologue, Evx 1, is expressed during early embryogenesis and neurogenesis in a biphasic manner [published erratum appears in EMBO J 1991 Dec;10(12):3978]. EMBO J. 1990 Jun;9(6):1839-52
(Latest) J:208270 Zhang H, et al., Long noncoding RNA-mediated intrachromosomal interactions promote imprinting at the Kcnq1 locus. J Cell Biol. 2014 Jan 6;204(1):61-75
All references(53)
Other
accession IDs
MGI:1930304

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory