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Rnf170
Gene Detail
 Symbol
Name
ID
Rnf170
ring finger protein 170
MGI:1924983
Synonyms 6720407G21Rik
Feature Type protein coding gene
Genetic Map
Chromosome 8
14.38 cM, cytoband A3
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr8:26119368-26143871 bp, + strand
From VEGA annotation of GRCm38

  24504 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:12807  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Rnf170

Human
homologs
Human Homolog RNF170, ring finger protein 170
NCBI Gene ID 81790
neXtProt AC  NX_Q96K19
Human Synonyms  ADSA, SNAX1
Human Chr (Location)  8p11.21; chr8:42849637-42896723 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human RNF170
Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(7) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Rnf170 interacts with 355 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (18 annotations)
Process biological_process
Component endoplasmic reticulum, integral component of membrane, ...
Function coenzyme F420-0 gamma-glutamyl ligase activity, coenzyme F420-2 alpha-glutamyl ligase activity, ...
External Resources: FuncBase
Expression
cDNA source data(49)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(49) cDNA(49)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000023970 (Evidence)
Ensembl Gene ModelENSMUSG00000013878 (Evidence)
Entrez Gene77733 (Evidence)
UniGene291906
DFCITC1583149, TC1586302, TC1587704, TC1593790, TC1596229, TC1664866
DoTSDT.486577, DT.87029316, DT.91430085, DT.94335791, DT.94335795, DT.97365832, DT.97392170
NIA Mouse Gene IndexU009208, U156469
EC6.3.2.-
Consensus CDS ProjectCCDS22207.1
International Mouse Knockout Project StatusRnf170
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023970 VEGA Gene Model | MGI Sequence Detail 24504 C57BL/6J ±  kb
transcript OTTMUST00000058582 VEGA | MGI Sequence Detail 3929 Not Applicable 
polypeptide OTTMUSP00000028405 VEGA | MGI Sequence Detail 286 Not Applicable 

For the selected sequences
All sequences(96) RefSeq(19) UniProt(5)
Polymorphisms SNPs within 2kb(95 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR010652 Protein of unknown function DUF1232
InterPro IPR018957 Zinc finger, C3HC4 RING-type
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
InterPro IPR001841 Zinc finger, RING-type
InterPro IPR017907 Zinc finger, RING-type, conserved site
Protein Ontology PR:000014104 E3 ubiquitin-protein ligase RNF170
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(33)
Other
accession IDs
MGI:2142571

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory