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Dpcd
Gene Detail
Symbol

Name
ID
Dpcd
deleted in primary ciliary dyskinesia
MGI:1924407
Synonyms
5330431N19Rik, Ndac
Feature Type
protein coding gene
Genetic Map
Chromosome 19
38.75 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr19:45560590-45578287 bp, + strand
From NCBI annotation of GRCm38

  17698 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9143  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: DPCD
Gene Tree: Dpcd

Human
homologs
DPCD, deleted in primary ciliary dyskinesia homolog (mouse)
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 25911
neXtProt AC: NX_Q9BVM2

Human Chr (Location): 10q24.32; chr10:101588332-101609653 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(13) : Gene trapped(6) Targeted(7)
Genomic Mutations involving Dpcd (5)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Dpcd interacts with 95 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process determination of left/right symmetry, epithelial cilium movement, ...
Component nucleus
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
cDNA source data(57)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase dpcd    NEW 
Molecular
reagents
All nucleic(59) Genomic(2) cDNA(57)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000041035 (Evidence)
Entrez Gene 226162 (Evidence)
UniGene 21978
DFCI TC1579784, TC1587877, TC1614368
DoTS DT.101392580, DT.101392581, DT.532464
NIA Mouse Gene Index U019509
Consensus CDS Project CCDS29862.1
International Mouse Phenotyping Consortium Status Dpcd
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 226162 NCBI Gene Model | MGI Sequence Detail 17698 C57BL/6J ±  kb
transcript NM_172639 RefSeq | MGI Sequence Detail 1353 C57BL/6 
polypeptide Q8BPA8 UniProt | EBI | MGI Sequence Detail 203 Not Applicable 

For the selected sequences
All sequences(26) RefSeq(6) UniProt(1)
Polymorphisms
SNPs within 2kb(98 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR026224 Protein DPCD
Protein Ontology PR:000006644 protein DPCD
Graphical View of Protein Domain Structure
References
(Earliest) J:57316 Sidow A, et al., A novel member of the F-box/WD40 gene family, encoding dactylin, is disrupted in the mouse dactylaplasia mutant. Nat Genet. 1999 Sep;23(1):104-7
(Latest) J:196292 Marinic M, et al., An integrated holo-enhancer unit defines tissue and gene specificity of the Fgf8 regulatory landscape. Dev Cell. 2013 Mar 11;24(5):530-42
All references(31)
Other
accession IDs
MGI:1345653

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory