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Dpcd
Gene Detail
Symbol

Name
ID
Dpcd
deleted in primary ciliary dyskinesia
MGI:1924407
Synonyms
5330431N19Rik, Ndac
Feature Type
protein coding gene
Genetic Map
Chromosome 19
38.75 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr19:45560615-45578279 bp, + strand
From Ensembl annotation of GRCm38

  17665 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9143  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Dpcd

Human
homologs
Human Homolog DPCD, deleted in primary ciliary dyskinesia homolog (mouse)
NCBI Gene ID 25911
neXtProt AC  NX_Q9BVM2
Human Chr (Location)  10q24.32; chr10:101587452-101609662 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(13) : Gene trapped(6) Targeted(7)
Genomic Mutations involving Dpcd (5)
Incidental mutations (data from Mutagenetix , APF )
Human Diseases Modeled Using Mouse Dpcd (1)    Alleles Annotated to Human Diseases(2)   
Interactions
Dpcd interacts with 95 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process determination of left/right symmetry, epithelial cilium movement, ...
Component nucleus
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
cDNA source data(57)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(59) Genomic(2) cDNA(57)
Microarray probesets(2)
Other database
links
Ensembl Gene ModelENSMUSG00000041035 (Evidence)
Entrez Gene226162 (Evidence)
UniGene21978
DFCITC1579784, TC1587877, TC1614368
DoTSDT.101392580, DT.101392581, DT.532464
NIA Mouse Gene IndexU019509
Consensus CDS ProjectCCDS29862.1
International Mouse Knockout Project StatusDpcd
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000041035 Ensembl Gene Model | MGI Sequence Detail 17665 C57BL/6J ±  kb
transcript ENSMUST00000047057 Ensembl | MGI Sequence Detail 1345 Not Applicable 
polypeptide ENSMUSP00000045683 Ensembl | MGI Sequence Detail 203 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(4) UniProt(1)
Polymorphisms
SNPs within 2kb(98 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR026224 Protein DPCD
Protein Ontology PR:000006644 protein DPCD
References
(Earliest) J:57316 Sidow A, et al., A novel member of the F-box/WD40 gene family, encoding dactylin, is disrupted in the mouse dactylaplasia mutant. Nat Genet. 1999 Sep;23(1):104-7
(Latest) J:196292 Marinic M, et al., An integrated holo-enhancer unit defines tissue and gene specificity of the Fgf8 regulatory landscape. Dev Cell. 2013 Mar 11;24(5):530-42
All references(32)
Other
accession IDs
MGI:1345653

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/21/2014
MGI 5.20
The Jackson Laboratory