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Sdccag8
Gene Detail
 Symbol
Name
ID
Sdccag8
serologically defined colon cancer antigen 8
MGI:1924066
Synonyms 2700048G21Rik, 5730470G24Rik, CCCAP
Feature Type protein coding gene
Genetic Map
Chromosome 1
82.66 cM, cytoband H3
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr1:176814660-177020437 bp, + strand
From VEGA annotation of GRCm38

  205778 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4839  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Sdccag8

Human
homologs
Human Homolog SDCCAG8, serologically defined colon cancer antigen 8
NCBI Gene ID 10806
neXtProt AC  NX_Q86SQ7
Human Synonyms  BBS16, CCCAP, CCCAP SLSN7, hCCCAP, NPHP10, NY-CO-8, SLSN7
Human Chr (Location)  1q43; chr1:243255434-243500091 (+)  GRCh38
Disease Associations  (2) Diseases Associated with Human SDCCAG8
Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(2) Targeted(2) Transposon induced(1)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a transposon insertion exhibit cleft palate, neonatal lethality, preaxial polydactyly, and polycystic kindey disease.
 
Interactions
Sdccag8 interacts with 62 markers (Mir22, Mir26a-2, Mir26b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process establishment of cell polarity, tube formation
Component cell-cell junction, cell junction, ...
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(10)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(10) cDNA(10)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000021519 (Evidence)
Ensembl Gene ModelENSMUSG00000026504 (Evidence)
Entrez Gene76816 (Evidence)
NIA Mouse Gene IndexU042235
Consensus CDS ProjectCCDS35798.1
International Mouse Knockout Project StatusSdccag8
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000021519 VEGA Gene Model | MGI Sequence Detail 205778 C57BL/6J ±  kb
transcript OTTMUST00000051035 VEGA | MGI Sequence Detail 2776 Not Applicable 
polypeptide OTTMUSP00000023961 VEGA | MGI Sequence Detail 717 Not Applicable 

For the selected sequences
All sequences(58) RefSeq(14) UniProt(8)
Polymorphisms SNPs within 2kb(1441 from dbSNP Build 137)    SNPs within 2kb including multiple locations(1445)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000014559 serologically defined colon cancer antigen 8
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)
Other
accession IDs
MGI:1917837

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory