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Vps35l Gene Detail
Summary
  • Symbol
    Vps35l
  • Name
    VPS35 endosomal protein sorting factor like
  • Synonyms
    2610029J22Rik, 9030624J02Rik, Vsp35l
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918767
    NCBI Gene: 71517
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:118740197-118841491 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 63.61 cM, cytoband F3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1449 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918767
protein coding gene Chr7:118740197-118842966 (.)
129S1/SvImJ MGP_129S1SvImJ_G0032904
protein coding gene Chr7:122609066-122723510 (+)
A/J MGP_AJ_G0032887
protein coding gene Chr7:119484471-119587542 (+)
AKR/J MGP_AKRJ_G0032819
protein coding gene Chr7:122542765-122645787 (+)
BALB/cJ MGP_BALBcJ_G0032892
protein coding gene Chr7:119202173-119302384 (+)
C3H/HeJ MGP_C3HHeJ_G0032602
protein coding gene Chr7:122433659-122544124 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033398
protein coding gene Chr7:127495698-127601555 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030370
protein coding gene Chr7:120920661-121022259 (+)
CAST/EiJ MGP_CASTEiJ_G0031930
protein coding gene Chr7:114202057-114310344 (+)
CBA/J MGP_CBAJ_G0032575
protein coding gene Chr7:131760137-131878957 (+)
DBA/2J MGP_DBA2J_G0032727
protein coding gene Chr7:117520208-117624432 (+)
FVB/NJ MGP_FVBNJ_G0032680
protein coding gene Chr7:117363376-117466428 (+)
LP/J MGP_LPJ_G0032821
protein coding gene Chr7:124068527-124177605 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032712
protein coding gene Chr7:133236765-133351070 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033418
protein coding gene Chr7:121549564-121649668 (+)
PWK/PhJ MGP_PWKPhJ_G0031638
protein coding gene Chr7:110424451-110529836 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031485
protein coding gene Chr7:108263311-108370028 (+)
WSB/EiJ MGP_WSBEiJ_G0032043
protein coding gene Chr7:122429469-122534869 (+)



Homology
more
  • Human Ortholog
    VPS35L, VPS35 endosomal protein sorting factor like
  • Vertebrate Orthologs
    10
  • Human Ortholog
    VPS35L, VPS35 endosomal protein sorting factor like
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C16orf62
  • Links
    NCBI Gene ID: 57020
    neXtProt AC: NX_Q7Z3J2
    UniProt: Q7Z3J2

  • Chr Location
    16p12.3; chr16:19555415-19701163 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 10659
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: VPS35L
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 71517 NCBI Gene Model | MGI Sequence Detail 101295 C57BL/6J ±  kb
transcript NM_027815 RefSeq | MGI Sequence Detail 3578 C57BL/6  
polypeptide Q8BWQ6 UniProt | EBI | MGI Sequence Detail 963 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    7 Sequences
  • InterPro Domains
    IPR029705 UPF0505 family
    IPR005378 Vacuolar protein sorting-associated protein 35
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 6
Other
Accession IDs
less
MGI:1916502
References
more
  • Summaries
    All 25
    Gene Ontology 2
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory