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Ssu72 Gene Detail
Summary
  • Symbol
    Ssu72
  • Name
    Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)
  • Synonyms
    1190002E22Rik, 1500011L16Rik, 2610101M12Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916241
    NCBI Gene: 68991
Location & Maps
more
  • Sequence Map
    Chr4:155704800-155733879 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      29080 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 87.07 cM, cytoband E2
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SSU72, SSU72 homolog, RNA polymerase II CTD phosphatase
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SSU72, SSU72 homolog, RNA polymerase II CTD phosphatase
    Orthology source: HGNC, HomoloGene
  • Synonyms
    HSPC182, PNAS-120
  • Links
    NCBI Gene ID: 29101
    neXtProt AC: NX_Q9NP77

  • Chr Location
    1p36.33; chr1:1541673-1574882 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    132
  • Gene trapped
    130
  • Targeted
    2
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000010846 VEGA Gene Model | MGI Sequence Detail 29080 C57BL/6J ±  kb
transcript OTTMUST00000025370 VEGA | MGI Sequence Detail 1472 Not Applicable  
polypeptide OTTMUSP00000011633 VEGA | MGI Sequence Detail 194 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    209 from dbSNP Build 142
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000015666 RNA polymerase II subunit A C-terminal domain phosphatase SSU72
  • EC
  • InterPro Domains
    IPR006811 RNA polymerase II subunit A
Molecular
Reagents
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  • All nucleic 11
    cDNA 11

    Microarray probesets 3
Other
Accession IDs
less
MGI:1916122, MGI:1926086
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory