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Rab39b Gene Detail
Summary
  • Symbol
    Rab39b
  • Name
    RAB39B, member RAS oncogene family
  • Synonyms
    6330580M05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915040
    NCBI Gene: 67790
  • Gene Overview
    MyGene.info: RAB39B
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:75572046-75578231 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 38.26 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    36 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915040
protein coding gene ChrX:75572045-75578231 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035862
protein coding gene ChrX:71423447-71429637 (-)
A/J MGP_AJ_G0035849
protein coding gene ChrX:71648485-71654670 (-)
AKR/J MGP_AKRJ_G0035770
protein coding gene ChrX:73483805-73489990 (-)
BALB/cJ MGP_BALBcJ_G0035831
protein coding gene ChrX:70645036-70651221 (-)
C3H/HeJ MGP_C3HHeJ_G0035541
protein coding gene ChrX:71913883-71920068 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036361
protein coding gene ChrX:73711657-73717842 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0034827
protein coding gene ChrX:57240633-57246820 (-)
CBA/J MGP_CBAJ_G0035514
protein coding gene ChrX:75681709-75687894 (-)
DBA/2J MGP_DBA2J_G0035672
protein coding gene ChrX:71089378-71095563 (-)
FVB/NJ MGP_FVBNJ_G0035613
protein coding gene ChrX:70417457-70423647 (-)
LP/J MGP_LPJ_G0035754
protein coding gene ChrX:72233783-72239973 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035647
protein coding gene ChrX:78301677-78307867 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036387
protein coding gene ChrX:71287036-71293221 (-)
PWK/PhJ MGP_PWKPhJ_G0034524
protein coding gene ChrX:55254681-55260870 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034360
protein coding gene ChrX:58060065-58066247 (-)
WSB/EiJ MGP_WSBEiJ_G0034966
protein coding gene ChrX:70497264-70503450 (-)



Homology
more
  • Human Ortholog
    RAB39B, RAB39B, member RAS oncogene family
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RAB39B, RAB39B, member RAS oncogene family
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BGMR, MRX72, WSMN, WSN
  • Links
    NCBI Gene ID: 116442
    neXtProt AC: NX_Q96DA2
    UniProt: Q96DA2

  • Chr Location
    Xq28; chrX:155258234-155264589 (-)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human RAB39B associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031202 Ensembl Gene Model | MGI Sequence Detail 6186 C57BL/6J ±  kb
transcript ENSMUST00000033545 Ensembl | MGI Sequence Detail 3401 Not Applicable  
polypeptide ENSMUSP00000033545 Ensembl | MGI Sequence Detail 213 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 23
    cDNA 20
    Primer pair 2
    Other 1

    Microarray probesets 4
References
more
  • Summaries
    All 30
    Developmental Gene Expression 4
    Gene Ontology 7
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:221875 Mignogna ML, et al., The intellectual disability protein RAB39B selectively regulates GluA2 trafficking to determine synaptic AMPAR composition. Nat Commun. 2015;6:6504

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory