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Rab39b
Gene Detail
Symbol

Name
ID
Rab39b
RAB39B, member RAS oncogene family
MGI:1915040
Synonyms
6330580M05Rik
Feature Type
protein coding gene
Genetic Map
Chromosome X
38.26 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
ChrX:75572046-75578231 bp, - strand
From VEGA annotation of GRCm38

  6186 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:62377  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: RAB39B
Protein SuperFamily: Ras-related protein Rab
Gene Tree: Rab39b

Human
homologs
RAB39B, RAB39B, member RAS oncogene family
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 116442
neXtProt AC: NX_Q96DA2

Human Synonyms: MRX72, WSMN

Human Chr (Location): Xq28; chrX:155258234-155264589 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human RAB39B

Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Targeted(1)
Interactions
Rab39b interacts with 322 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (23 annotations)
Process intracellular protein transport, protein transport, ...
Component cell, Golgi apparatus, ...
Function GTPase activity, GTP binding, ...
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (39)    Tissues (8)    Images (19)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 39
cDNA source data(19)
Other mouse links: Allen Institute   GENSAT   GEO   Expression Atlas
Other vertebrate links: Xenbase rab39b    NEW 
Molecular
reagents
All nucleic(19) cDNA(19)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000018905 (Evidence)
Ensembl Gene Model ENSMUSG00000031202 (Evidence)
Entrez Gene 67790 (Evidence)
UniGene 45148
DFCI TC1585010, TC1609968
DoTS DT.50316498, DT.101382416
NIA Mouse Gene Index U039484
Consensus CDS Project CCDS30242.1
International Mouse Phenotyping Consortium Status Rab39b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018905 VEGA Gene Model | MGI Sequence Detail 6186 C57BL/6J ±  kb
transcript OTTMUST00000045449 VEGA | MGI Sequence Detail 3401 Not Applicable 
polypeptide OTTMUSP00000020441 VEGA | MGI Sequence Detail 213 Not Applicable 

For the selected sequences
All sequences(28) RefSeq(2) UniProt(2)
Polymorphisms
SNPs within 2kb(36 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR001806 Small GTPase superfamily
InterPro IPR003579 Small GTPase superfamily, Rab type
InterPro IPR005225 Small GTP-binding protein domain
Protein Ontology PR:000013616 ras-related protein Rab-39B
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:221875 Mignogna ML, et al., The intellectual disability protein RAB39B selectively regulates GluA2 trafficking to determine synaptic AMPAR composition. Nat Commun. 2015;6:6504
All references(31)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory