About   Help   FAQ
Rab39b
Gene Detail
 Symbol
Name
ID
Rab39b
RAB39B, member RAS oncogene family
MGI:1915040
Synonyms 6330580M05Rik
Feature Type protein coding gene
Genetic Map
Chromosome X
38.26 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
ChrX:75572046-75578231 bp, - strand
From VEGA annotation of GRCm38

  6186 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:62377  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 2 zebrafish

Protein SuperFamily: Ras-related protein Rab
Gene Tree: Rab39b

Human
homologs
Human Homolog RAB39B, RAB39B, member RAS oncogene family
NCBI Gene ID 116442
neXtProt AC  NX_Q96DA2
Human Synonyms  MRX72
Human Chr (Location)  Xq28; chrX:155258234-155264589 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Targeted(1)
Interactions
Rab39b interacts with 323 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (14 annotations)
Process protein transport, small GTPase mediated signal transduction, ...
Component Golgi apparatus, intracellular, ...
Function GTP binding, nucleotide binding
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (39)    Tissues (8)    Images (19)
Theiler Stages: 23
Assay TypeResults
RNA in situ 39
cDNA source data(19)
External Resources: Allen Institute   GENSAT   GEO   Expression Atlas
Molecular
reagents
All nucleic(19) cDNA(19)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000018905 (Evidence)
Ensembl Gene ModelENSMUSG00000031202 (Evidence)
Entrez Gene67790 (Evidence)
UniGene45148
DFCITC1585010, TC1609968
DoTSDT.101382416, DT.50316498
NIA Mouse Gene IndexU039484
Consensus CDS ProjectCCDS30242.1
International Mouse Knockout Project StatusRab39b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018905 VEGA Gene Model | MGI Sequence Detail 6186 C57BL/6J ±  kb
transcript OTTMUST00000045449 VEGA | MGI Sequence Detail 3401 Not Applicable 
polypeptide OTTMUSP00000020441 VEGA | MGI Sequence Detail 213 Not Applicable 

For the selected sequences
All sequences(28) RefSeq(2) UniProt(2)
Polymorphisms SNPs within 2kb(36 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR001806 Small GTPase superfamily
InterPro IPR003579 Small GTPase superfamily, Rab type
InterPro IPR005225 Small GTP-binding protein domain
Protein Ontology PR:000013616 ras-related protein Rab-39B
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:206228 Lee K, et al., Reduced polyalanine-expanded Arx mutant protein in developing mouse subpallium alters Lmo1 transcriptional regulation. Hum Mol Genet. 2014 Feb 15;23(4):1084-94
All references(30)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
07/23/2014
MGI 5.19
The Jackson Laboratory