Rab39b
Gene Detail

Symbol Name ID

Rab39b RAB39B, member RAS oncogene family MGI:1915040

Synonyms

6330580M05Rik

Feature Type

protein coding gene

Genetic Map

Chromosome X

38.26 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)

Sequence Map

ChrX:75572046-75578231 bp, - strand From VEGA annotation of GRCm38   6186 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:62377  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 2 zebrafish

Protein SuperFamily: Ras-related protein Rab
Gene Tree: Rab39b

Human homologs

Human Homolog		RAB39B, RAB39B, member RAS oncogene family
NCBI Gene ID		116442
neXtProt AC		NX_Q96DA2
Human Synonyms		MRX72
Human Chr (Location)		Xq28; chrX:154487526-154493852 (-)  GRCh37.p10
Disease Associations		(1) Diseases Associated with Human RAB39B

Alleles and phenotypes

All alleles(1) : Targeted(1)

Gene Ontology (GO) classifications

All GO classifications: (14 annotations)

Process	protein transport, small GTPase mediated signal transduction, ...
Component	Golgi apparatus, intracellular, ...
Function	GTP binding, nucleotide binding

External Resources: FuncBase

Expression

Literature Summary: (3 records)
Data Summary: Results (39)    Tissues (8)    Images (19)
Theiler Stages: 23

Assay Type	Results
RNA in situ	39

cDNA source data(19)
External Resources: Allen Institute   GENSAT   GEO   ArrayExpress

Molecular reagents

All nucleic(19) cDNA(19)
Microarray probesets(4)

Other database links

VEGA Gene Model	OTTMUSG00000018905 (Evidence)
Ensembl Gene Model	ENSMUSG00000031202 (Evidence)
Entrez Gene	67790 (Evidence)
UniGene	45148
DFCI	TC1585010, TC1609968
DoTS	DT.101382416, DT.50316498
NIA Mouse Gene Index	U039484
Consensus CDS Project	CCDS30242.1
International Mouse Knockout Project Status	Rab39b

Sequences

Length	Strain/Species
genomic	OTTMUSG00000018905	VEGA Gene Model | MGI Sequence Detail	6186	C57BL/6J
transcript	OTTMUST00000045449	VEGA | MGI Sequence Detail	3401	Not Applicable
polypeptide	OTTMUSP00000020441	VEGA | MGI Sequence Detail	213	Not Applicable

All sequences(26) RefSeq(2) UniProt(2)

Polymorphisms

SNPs(32 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001806	Small GTPase superfamily
InterPro	IPR003579	Small GTPase superfamily, Rab type
InterPro	IPR005225	Small GTP-binding protein domain
Protein Ontology	PR:000013616	ras-related protein Rab-39B

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:182314 Lee MP, et al., Twist1 directly regulates genes that promote cell proliferation and migration in developing heart valves. PLoS One. 2011;6(12):e29758
All references(29)