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Nr2f1 Gene Detail
Summary
  • Symbol
    Nr2f1
  • Name
    nuclear receptor subfamily 2, group F, member 1
  • Synonyms
    COUP-TF1, COUP-TFI, Erbal3, Tcfcoup1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1352451
    NCBI Gene: 13865
  • Gene Overview
    MyGene.info: NR2F1
  • Alliance
  • Transcription Start Sites
    14 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:78188971-78198982 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 41.38 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    44 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1352451
protein coding gene Chr13:78188971-78199757 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020784
protein coding gene Chr13:78760126-78770910 (-)
A/J MGP_AJ_G0020740
protein coding gene Chr13:76065646-76076507 (-)
AKR/J MGP_AKRJ_G0020713
protein coding gene Chr13:78375487-78386268 (-)
BALB/cJ MGP_BALBcJ_G0020736
protein coding gene Chr13:76588428-76597212 (-)
C3H/HeJ MGP_C3HHeJ_G0020530
protein coding gene Chr13:78044194-78056630 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021173
protein coding gene Chr13:81402843-81414435 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018741
protein coding gene Chr13:72721033-72731752 (-)
CAST/EiJ MGP_CASTEiJ_G0020048
protein coding gene Chr13:77130609-77163470 (-)
CBA/J MGP_CBAJ_G0020489
protein coding gene Chr13:84464992-84474646 (-)
DBA/2J MGP_DBA2J_G0020614
protein coding gene Chr13:75763845-75774671 (-)
FVB/NJ MGP_FVBNJ_G0020594
protein coding gene Chr13:74857458-74867856 (-)
LP/J MGP_LPJ_G0020687
protein coding gene Chr13:79027447-79038550 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020623
protein coding gene Chr13:82948000-82961405 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021213
protein coding gene Chr13:77712795-77724602 (-)
PWK/PhJ MGP_PWKPhJ_G0019801
protein coding gene Chr13:74649702-74670937 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019624
protein coding gene Chr13:73972902-74005159 (-)
WSB/EiJ MGP_WSBEiJ_G0020105
protein coding gene Chr13:78166391-78177876 (-)



Homology
more
  • Human Ortholog
    NR2F1, nuclear receptor subfamily 2 group F member 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    NR2F1, nuclear receptor subfamily 2 group F member 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    BBOAS, BBSOAS, COUPTF1, COUP-TFI, EAR3, EAR-3, ERBAL3, SVP44, TCFCOUP1, TFCOUP1
  • Links
    NCBI Gene ID: 7025
    neXtProt AC: NX_P10589
    UniProt: P10589

  • Chr Location
    5q15; chr5:93583337-93594613 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    30 phenotypes from 4 alleles in 4 genetic backgrounds
    17 phenotypes from multigenic genotypes
    36 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygotes for a null allele die perinatally with axon guidance defects in all forebrain commissures. Homozygotes for another null allele show neonatal death, impaired cranial ganglion IX formation and axon guidance, increased cochlear HC and support cell number, and altered cortex regionalization.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 13865 NCBI Gene Model | MGI Sequence Detail 10012 C57BL/6J ±  kb
    transcript NM_010151 RefSeq | MGI Sequence Detail 2347 C57BL/6  
    polypeptide Q60632 UniProt | EBI | MGI Sequence Detail 422 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      6 Sequences
    • InterPro Domains
      IPR001723 Nuclear hormone receptor
      IPR000536 Nuclear hormone receptor, ligand-binding domain
      IPR035500 Nuclear hormone receptor-like domain superfamily
      IPR003068 Transcription factor COUP
      IPR013088 Zinc finger, NHR/GATA-type
      IPR001628 Zinc finger, nuclear hormone receptor-type
    Molecular
    Reagents
    less
    • All nucleic 73
      Genomic 14
      cDNA 44
      Primer pair 8
      Other 7

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGD-MRK-18611, MGD-MRK-33774, MGI:101801
    References
    more
    • Summaries
      All 151
      Developmental Gene Expression 99
      Gene Ontology 8
      Phenotypes 36
    • Earliest
      J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
    • Latest
      J:264553 Tarchini B, et al., A spontaneous mouse deletion in Mctp1 uncovers a long-range cis-regulatory region crucial for NR2F1 function during inner ear development. Dev Biol. 2018 Nov 15;443(2):153-164

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    12/11/2018
    MGI 6.13
    The Jackson Laboratory