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Cdyl Gene Detail
Summary
  • Symbol
    Cdyl
  • Name
    chromodomain protein, Y chromosome-like
  • Feature Type
    protein coding gene
  • IDs
    MGI:1339956
    NCBI Gene: 12593
Location & Maps
more
  • Sequence Map
    Chr13:35659862-35874064 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      214203 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 14.39 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    CDYL, chromodomain Y-like
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CDYL, chromodomain Y-like
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CDYL1
  • Links
    NCBI Gene ID: 9425
    neXtProt AC: NX_Q9Y232

  • Chr Location
    6p25.1; chr6:4706159-4955544 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 3548
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CDYL
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
  • All Mutations and Alleles
    65
  • Chemically induced (other)
    1
  • Gene trapped
    64
  • Genomic Mutations
    1 involving Cdyl
  • Incidental Mutations
    APF
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000059288 Ensembl Gene Model | MGI Sequence Detail 214203 C57BL/6J ±  kb
transcript ENSMUST00000075220 Ensembl | MGI Sequence Detail 3442 Not Applicable  
polypeptide ENSMUSP00000074707 Ensembl | MGI Sequence Detail 593 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    1235 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 14
    Primer pair 1

    Microarray probesets 6
Other
Accession IDs
less
MGI:2145214
References
more
  • Summaries
    All 41
    Developmental Gene Expression 2
    Gene Ontology 6
    Phenotypes 11
  • Earliest
    J:51454 Lahn BT, et al., Retroposition of autosomal mRNA yielded testis-specific gene family on human Y chromosome [published erratum appears in Nat Genet 1999 Jun;22(2):209]. Nat Genet. 1999 Apr;21(4):429-33
  • Latest
    J:206754 Escamilla-Del-Arenal M, et al., Cdyl, a new partner of the inactive X chromosome and potential reader of H3K27me3 and H3K9me2. Mol Cell Biol. 2013 Dec;33(24):5005-20

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory