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Tnfrsf1a Gene Detail
Summary
  • Symbol
    Tnfrsf1a
  • Name
    tumor necrosis factor receptor superfamily, member 1a
  • Synonyms
    CD120a, p55, p55-R, TNF-alphaR1, TNF-alpha-R1, TNFalpha-R1, TNFAR, Tnfr1, TNF-R1, TNF-R55, TNFR60, TNF receptor alpha chain, TNFRI, TNF-R-I, TNFRp55
  • Feature Type
    protein coding gene
  • IDs
    MGI:1314884
    NCBI Gene: 21937
  • Gene Overview
    MyGene.info: TNFRSF1A
  • Alliance
    gene page
Location & Maps
more
  • Sequence Map
    Chr6:125349362-125362484 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser
  • Download
    Sequence
      13123 bp   ±  kb flank

  • Genome Browsers
    VEGA | Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 59.32 cM
  • Mapping Data
    24 experiments
  • Sequence Tag
    D6Mit254
Homology
more
  • Human Ortholog
    TNFRSF1A, TNF receptor superfamily member 1A
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TNFRSF1A, TNF receptor superfamily member 1A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CD120a, FPF, p55, p55-R, p60, TBP1, TNFAR, TNF-R, TNFR1, TNFR55, TNF-R55, TNFR60, TNF-R-I
  • Links
    NCBI Gene ID: 7132
    neXtProt AC: NX_P19438
    UniProt: P19438

  • Chr Location
    12p13.31; chr12:6328757-6342117 (-)  GRCh38.p7
Human Diseases
more
  • Diseases
    1 with Tnfrsf1a mouse models; 2 with human TNFRSF1A associations

Human Disease Mouse Models
      
IDs
 View 3 models
      
IDs
 View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    4 with disease annotations
  • References
    3 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    58 phenotypes from 9 alleles in 19 genetic backgrounds
    126 phenotypes from multigenic genotypes
    1 images
    657 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygotes for targeted null mutations exhibit disrupted splenic architecture, increased adult liver weights, reduced IgG immune response, deficits in some host defense and inflammatory responses, LPS resistance, and reduced graft-vs-host disease.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    74
  • GO References
    26
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    69
  • Tissues
    45
  • cDNA Data
    14
  • Literature Summary
    23
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023806 VEGA Gene Model | MGI Sequence Detail 13123 C57BL/6J ±  kb
transcript OTTMUST00000058165 VEGA | MGI Sequence Detail 2156 Not Applicable  
polypeptide OTTMUSP00000028139 VEGA | MGI Sequence Detail 454 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    69 from dbSNP Build 142
  • PCR
    2
  • RFLP
    5
Protein
Information
less
Molecular
Reagents
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  • All nucleic 39
    Genomic 15
    cDNA 15
    Primer pair 7
    Other 2

    Microarray probesets 4
Other
Accession IDs
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MGD-MRK-15155, MGD-MRK-15156, MGI:98781
References
more
  • Summaries
    All 842
    Developmental Gene Expression 23
    Diseases 3
    Gene Ontology 26
    Phenotypes 657
  • Earliest
    J:229737 Idell S, et al., Local abnormalities in coagulation and fibrinolytic pathways predispose to alveolar fibrin deposition in the adult respiratory distress syndrome. J Clin Invest. 1989 Aug;84(2):695-705
  • Latest
    J:242561 Yuan D, et al., Kupffer Cell-Derived Tnf Triggers Cholangiocellular Tumorigenesis through JNK due to Chronic Mitochondrial Dysfunction and ROS. Cancer Cell. 2017 Jun 12;31(6):771-789.e6
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/17/2017
MGI 6.10 		The Jackson Laboratory