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Cdkl5 Gene Detail
Summary
  • Symbol
    Cdkl5
  • Name
    cyclin-dependent kinase-like 5
  • Synonyms
    Stk9
  • Feature Type
    protein coding gene
  • IDs
    MGI:1278336
    NCBI Gene: 382253
  • Gene Overview
    MyGene.info: CDKL5
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:160784308-160994681 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 73.95 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    546 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1278336
protein coding gene ChrX:160771923-160994704 (-)
129S1/SvImJ MGP_129S1SvImJ_G0036234
protein coding gene ChrX:158700043-158930689 (-)
A/J MGP_AJ_G0036204
protein coding gene ChrX:157957644-158187921 (-)
AKR/J MGP_AKRJ_G0036132
protein coding gene ChrX:162972036-163204184 (-)
BALB/cJ MGP_BALBcJ_G0036197
protein coding gene ChrX:156032502-156256512 (-)
C3H/HeJ MGP_C3HHeJ_G0035903
protein coding gene ChrX:159101654-159331582 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036719
protein coding gene ChrX:163427721-163655906 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033541
protein coding gene ChrX:149180471-149403114 (-)
CAST/EiJ MGP_CASTEiJ_G0035192
protein coding gene ChrX:138110860-138346195 (-)
CBA/J MGP_CBAJ_G0035878
protein coding gene ChrX:168079245-168330325 (-)
DBA/2J MGP_DBA2J_G0036044
protein coding gene ChrX:156916399-157139582 (-)
FVB/NJ MGP_FVBNJ_G0035975
protein coding gene ChrX:156032791-156255276 (-)
LP/J MGP_LPJ_G0036129
protein coding gene ChrX:159881116-160108268 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0036007
protein coding gene ChrX:176792547-177040797 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036760
protein coding gene ChrX:158253019-158479386 (-)
PWK/PhJ MGP_PWKPhJ_G0034890
protein coding gene ChrX:134963693-135191483 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034711
protein coding gene ChrX:138524986-138759766 (-)
WSB/EiJ MGP_WSBEiJ_G0035327
protein coding gene ChrX:156222357-156450753 (-)



Homology
more
  • Human Ortholog
    CDKL5, cyclin dependent kinase like 5
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CDKL5, cyclin dependent kinase like 5
    Orthology source: HGNC, HomoloGene
  • Synonyms
    CFAP247, EIEE2, ISSX, STK9
  • Links
    NCBI Gene ID: 6792
    neXtProt AC: NX_O76039
    UniProt: O76039

  • Chr Location
    Xp22.13; chrX:18425605-18653629 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 55719
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CDKL5
  • Gene Tree
Human Diseases
more
  • Diseases
    1 with Cdkl5 mouse models; 1 with human CDKL5 associations

Human Disease Mouse Models
      
IDs
View 2 models
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    22 phenotypes from 4 alleles in 6 genetic backgrounds
    2 images
    18 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Male mice hemizygous for a knock-out allele exhibit hyperactivity, impaired coordination, decreased anxiety-related response, limb grasping, social withdrawal, and impaired nesting, conditioned behavior learning and auditory-evoked event-related potentials.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 382253 NCBI Gene Model | MGI Sequence Detail 210374 C57BL/6J ±  kb
    transcript NM_001024624 RefSeq | MGI Sequence Detail 3246 C57BL/6  
    polypeptide Q3UTQ8 UniProt | EBI | MGI Sequence Detail 938 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      4 Sequences
    • EC
    • InterPro Domains
      IPR017441 Protein kinase, ATP binding site
      IPR000719 Protein kinase domain
      IPR011009 Protein kinase-like domain superfamily
      IPR008271 Serine/threonine-protein kinase, active site
    Molecular
    Reagents
    less
    • All nucleic 10
      cDNA 10

      Microarray probesets 1
    Other
    Accession IDs
    less
    MGI:2448589
    References
    more
    • Summaries
      All 50
      Developmental Gene Expression 6
      Diseases 1
      Gene Ontology 7
      Phenotypes 18
    • Earliest
      J:46359 Blair HJ, et al., Mouse mutants carrying deletions that remove the genes mutated in Coffin-Lowry syndrome and lactic acidosis. Hum Mol Genet. 1998 Mar;7(3):549-55
    • Latest
      J:262058 Okuda K, et al., Comprehensive behavioral analysis of the Cdkl5 knockout mice revealed significant enhancement in anxiety- and fear-related behaviors and impairment in both acquisition and long-term retention of spatial reference memory. PLoS One. 2018;13(4):e0196587

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    12/11/2018
    MGI 6.13
    The Jackson Laboratory