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Atg5
Gene Detail
Symbol

Name
ID
Atg5
autophagy related 5
MGI:1277186
Synonyms
2010107M05Rik, 3110067M24Rik, Apg5l, Paddy
Feature Type
protein coding gene
Genetic Map
Chromosome 10
23.24 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr10:44268358-44364291 bp, + strand
From Ensembl annotation of GRCm38

  95934 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3566  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Atg5

Human
homologs
Human Homolog ATG5, autophagy related 5
NCBI Gene ID 9474
neXtProt AC  NX_Q9H1Y0
Human Synonyms  APG5, APG5L, APG5-LIKE, ASP, hAPG5
Human Chr (Location)  6q21; chr6:106184476-106325820 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(25) : Gene trapped(22) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
 
Mutation of this gene results in impaired autophagy due to absence of autolysosomes. Homozygotes die within 1 day of birth, have shorter survival times and reduced amino acid levels under fasting conditions. Homozygotes for a gene trap insertion mutation in this gene show no abnormal phenotype.
 
Interactions
Atg5 interacts with 227 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (37 annotations)
Process apoptotic process, autophagic vacuole assembly, ...
Component Atg12-Atg5-Atg16 complex, autophagic vacuole, ...
Function Atg8 ligase activity, protein binding
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
Literature Summary: (8 records)
Data Summary: Results (42)    Tissues (28)    Images (13)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 42
cDNA source data(79)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(80) cDNA(80)
Microarray probesets(5)
Other database
links
Ensembl Gene ModelENSMUSG00000038160 (Evidence)
Entrez Gene11793 (Evidence)
UniGene22264
DFCITC1740598, TC1575779
DoTSDT.94400199, DT.494574
NIA Mouse Gene IndexU011479
Consensus CDS ProjectCCDS23824.1
International Mouse Knockout Project StatusAtg5
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038160 Ensembl Gene Model | MGI Sequence Detail 95934 C57BL/6J ±  kb
transcript ENSMUST00000039286 Ensembl | MGI Sequence Detail 2352 Not Applicable 
polypeptide ENSMUSP00000044769 Ensembl | MGI Sequence Detail 275 Not Applicable 

For the selected sequences
All sequences(30) RefSeq(6) UniProt(3)
Polymorphisms
SNPs within 2kb(293 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007239 Autophagy-related protein 5
Protein Ontology PR:000004418 autophagy protein 5
References
(Earliest) J:48376 Pires-DaSilva A, et al., Gene trap insertion into a novel gene expressed during mouse limb development. Dev Dyn. 1998 Jun;212(2):318-25
(Latest) J:213671 Uemura T, et al., A cluster of thin tubular structures mediates transformation of the endoplasmic reticulum to autophagic isolation membrane. Mol Cell Biol. 2014 May;34(9):1695-706
All references(159)
Other
accession IDs
MGI:1277148, MGI:1917267, MGI:1920439, MGI:2143833, MGI:2143950

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory