About   Help   FAQ
Gdnf
Gene Detail
Symbol

Name
ID
Gdnf
glial cell line derived neurotrophic factor
MGI:107430
Synonyms
glial cell line-derived neurotrophic factor
Feature Type
protein coding gene
Genetic Map
Chromosome 15
3.80 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr15:7811011-7837575 bp, + strand
From NCBI annotation of GRCm38

  26565 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:433  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: glial cell line-derived neurotrophic factor
Gene Tree: Gdnf

Human
homologs
Human Homolog GDNF, glial cell derived neurotrophic factor
NCBI Gene ID 2668
neXtProt AC  NX_P39905
Human Synonyms  ATF1, ATF2, HFB1-GDNF, HSCR3
Human Chr (Location)  5p13.1-p12; chr5:37812677-37839680 (-)  GRCh38
Disease Associations  (3) Diseases Associated with Human GDNF
Mutations,
alleles, and
phenotypes
All mutations/alleles(10) : Targeted(9) Transposon induced(1)
Genomic Mutations involving Gdnf (1)
 
Homozygous inactivation of this gene leads to lack of ureteric bud induction, bilateral renal agenesis, absence of enteric neurons, and neonatal death. Heterozygotes show renal phenotypes ranging from two small kidneys, often with abnormal shapes and cortical cysts, to unilateral renal agenesis.
 
Human Diseases Modeled Using Mouse Gdnf (1)    Alleles Annotated to Human Diseases(2)   
Interactions
Gdnf interacts with 288 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (142 records)
Data Summary: Results (367)    Tissues (176)    Images (89)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 183
In situ reporter (knock in) 1
RT-PCR 183
cDNA source data(12)
External Resources: Allen Institute   GENSAT   GEO   Expression Atlas
Molecular
reagents
All nucleic(31) Genomic(4) cDNA(17) Primer pair(9) Other(1)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000022144 (Evidence)
Entrez Gene14573 (Evidence)
UniGene4679
DFCITC1591077, TC1666746, TC1679564
DoTSDT.481635, DT.91446648
NIA Mouse Gene IndexU016047, U149303
Consensus CDS ProjectCCDS27371.1
International Mouse Knockout Project StatusGdnf
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 14573 NCBI Gene Model | MGI Sequence Detail 26565 C57BL/6J ±  kb
transcript NM_010275 RefSeq | MGI Sequence Detail 4477 C57BL/6 
polypeptide P48540 UniProt | EBI | MGI Sequence Detail 211 Not Applicable 

For the selected sequences
All sequences(32) RefSeq(8) UniProt(1)
Polymorphisms
SNPs within 2kb(33 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR016649 Glial cell line-derived neurotrophic factor
InterPro IPR001839 Transforming growth factor-beta, C-terminal
Protein Ontology PR:000007928 glial cell line-derived neurotrophic factor
Graphical View of Protein Domain Structure
References
(Earliest) J:38540 Lin LF, et al., GDNF: a glial cell line-derived neurotrophic factor for midbrain dopaminergic neurons [see comments]. Science. 1993 May 21;260(5111):1130-2
(Latest) J:206883 Murashima A, et al., Midline-derived Shh regulates mesonephric tubule formation through the paraxial mesoderm. Dev Biol. 2014 Feb 1;386(1):216-26
All references(253)
Disease annotation references (3)
Other
accession IDs
MGD-MRK-35901, MGI:2145987

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
10/08/2014
MGI 5.20
The Jackson Laboratory