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Foxn1
Gene Detail
Symbol

Name
ID
Foxn1
forkhead box N1
MGI:102949
Synonyms
D11Bhm185e, Hfh11, whn
Feature Type
protein coding gene
Genetic Map
Chromosome 11
46.74 cM
Detailed Genetic Map ± 1 cM


Mapping data(23)
Sequence Map
Chr11:78357577-78386558 bp, - strand
From VEGA annotation of GRCm38

  28982 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:2664  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: FOXN1
Gene Tree: Foxn1

Human
homologs
FOXN1, forkhead box N1
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 8456
neXtProt AC: NX_O15353

Human Synonyms: FKHL20, RONU, WHN

Human Chr (Location): 17q11.2; chr17:28506229-28538900 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human FOXN1

Mutations,
alleles, and
phenotypes
All mutations/alleles(27) : Gene trapped(4) Spontaneous(7) Targeted(15) Transgenic(1)
Genomic Mutations involving Foxn1 (1)
Incidental mutations (data from Mutagenetix , APF )
 
Homozygotes for different mutations have in genetically determined absence or loss of hair and failed hair keratinization, premature lethality (differing by genetic background) and absence of thymus, resulting in multiple immune abnormalities. Heterozygotes have enlarged thymuses.
 
Human Diseases Modeled in Mice Using Foxn1 (2)    Mutations Annotated to Human Diseases (4)    Phenotype Images(6)
Interactions
Foxn1 interacts with 213 markers (Mir7-1, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (31 annotations)
Process blood vessel morphogenesis, cell differentiation, ...
Component nucleus
Function DNA binding, sequence-specific DNA binding, ...
External Resources: FuncBase
Expression
Literature Summary: (45 records)
Data Summary: Results (165)    Tissues (85)    Images (52)    Tissue x Stage Matrix (view)
Assay TypeResults
Immunohistochemistry 10
RNA in situ 94
In situ reporter (knock in) 3
Northern blot 12
Western blot 6
RT-PCR 40
cDNA source data(15)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: GEISHA FOXN1 ; Xenbase foxn1 ; ZFIN foxn1    NEW 
Molecular
reagents
All nucleic(44) Genomic(18) cDNA(15) Primer pair(7) Other(4)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000000142 (Evidence)
Ensembl Gene Model ENSMUSG00000002057 (Evidence)
Entrez Gene 15218 (Evidence)
DFCI TC1589791, TC1725890, TC1712018
DoTS DT.524482
NIA Mouse Gene Index U033130
Consensus CDS Project CCDS25102.1
International Mouse Phenotyping Consortium Status Foxn1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000000142 VEGA Gene Model | MGI Sequence Detail 28982 C57BL/6J ±  kb
transcript OTTMUST00000000457 VEGA | MGI Sequence Detail 3214 Not Applicable 
polypeptide OTTMUSP00000000197 VEGA | MGI Sequence Detail 648 Not Applicable 

For the selected sequences
All sequences(40) RefSeq(14) UniProt(3)
Polymorphisms
PCR(3) : SNPs within 2kb(93 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001766 Transcription factor, fork head
InterPro IPR011991 Winged helix-turn-helix DNA-binding domain
Protein Ontology PR:000007636 forkhead box protein N1
References
(Earliest) J:2484 Truslove GM, Genetical studies on the skeleton of the mouse. V. 'Interfrontal' and 'parted frontals'. J Genet. 1952;51:115-122
(Latest) J:222308 Fairfield H, et al., Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders. Genome Res. 2015 Jul;25(7):948-57
All references(540)
Disease annotation references (8)
Other
accession IDs
MGD-MRK-12946, MGD-MRK-23783, MGD-MRK-35270, MGI:106810

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory