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Tbx5
Gene Detail
 Symbol
Name
ID
Tbx5
T-box 5
MGI:102541
Feature Type protein coding gene
Genetic Map
Chromosome 5
60.42 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr5:119834663-119885218 bp, + strand
From NCBI annotation of GRCm38

  50556 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:160  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Tbx5

Human
homologs
Human Homolog TBX5, T-box 5
NCBI Gene ID 6910
neXtProt AC  NX_Q99593
Human Synonyms  HOS
Human Chr (Location)  12q24.1; chr12:114353930-114408442 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human TBX5
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
 
Heterozygous null mice exhibit strain-dependent perinatal lethality, forelimb and variable congenital heart malformations, whereas homozygous null mice are growth arrested and die by E10.5 of severe heart defects. Hypomorphic mutants show milder defects both in the hetero- and homozygous null state.
 
Human Diseases Modeled Using Mouse Tbx5 (1)    Alleles Annotated to Human Diseases(1)   
Interactions
Tbx5 interacts with 223 markers (Mir1a-1, Mir1a-2, Mir10a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (59 annotations)
Process apoptotic nuclear changes, atrial septum development, ...
Component cytoplasm, nucleus, ...
Function DNA binding, protein binding, ...
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
Literature Summary: (176 records)
Data Summary: Results (393)    Tissues (188)    Images (149)
Theiler Stages: 2, 3, 4, 5, 11, 12, 13, 14, 15, 17, 19, 20, 21, 23, 24, 25, 28
Assay TypeResults
RNA in situ 352
Northern blot 1
RT-PCR 40
cDNA source data(19)
External Resources: GEO   Expression Atlas
Molecular
reagents
All nucleic(28) cDNA(19) Primer pair(7) Other(2)
Microarray probesets(5)
Other database
links
Ensembl Gene ModelENSMUSG00000018263 (Evidence)
Entrez Gene21388 (Evidence)
UniGene103636
DFCITC1587199, TC1665718, TC1712184
DoTSDT.55222161, DT.87047045
NIA Mouse Gene IndexU006099
Consensus CDS ProjectCCDS19615.1
International Mouse Knockout Project StatusTbx5
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 21388 NCBI Gene Model | MGI Sequence Detail 50556 C57BL/6J ±  kb
transcript NM_011537 RefSeq | MGI Sequence Detail 3941 C57BL/6 
polypeptide P70326 UniProt | EBI | MGI Sequence Detail 518 Not Applicable 

For the selected sequences
All sequences(36) RefSeq(14) UniProt(3)
Polymorphisms RFLP(1) : SNPs within 2kb(305 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008967 p53-like transcription factor, DNA-binding
InterPro IPR001699 Transcription factor, T-box
InterPro IPR018186 Transcription factor, T-box, conserved site
Protein Ontology PR:000016153 T-box transcription factor TBX5
Graphical View of Protein Domain Structure
References (Earliest) J:864 Namba T, et al., Mouse thromboxane A2 receptor: cDNA cloning, expression and northern blot analysis. Biochem Biophys Res Commun. 1992 May 15;184(3):1197-203
(Latest) J:207600 Gros J, et al., Vertebrate limb bud formation is initiated by localized epithelial-to-mesenchymal transition. Science. 2014 Mar 14;343(6176):1253-6
All references(233)
Disease annotation references (2)
Other
accession IDs
MGD-MRK-19390

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory