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Tcf12 Gene Detail
Summary
  • Symbol
    Tcf12
  • Name
    transcription factor 12
  • Synonyms
    ALF1, bHLHb20, HEB, HEBAlt, HTF4, HTF-4, ME1, REB
  • Feature Type
    protein coding gene
  • IDs
    MGI:101877
    NCBI Gene: 21406
  • Gene Overview
    MyGene.info: TCF12
  • Alliance
    gene page
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:71844252-72111819 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 39.85 cM
  • Mapping Data
    8 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1335 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_101877
 protein coding gene Chr9:71842688-72111871 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035012
 protein coding gene Chr9:71980518-72253045 (-)
A/J MGP_AJ_G0034993
 protein coding gene Chr9:69463764-69728013 (-)
AKR/J MGP_AKRJ_G0034922
 protein coding gene Chr9:71130169-71398641 (-)
BALB/cJ MGP_BALBcJ_G0034985
 protein coding gene Chr9:69178675-69439803 (-)
C3H/HeJ MGP_C3HHeJ_G0034694
 protein coding gene Chr9:71635356-71906431 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035504
 protein coding gene Chr9:73880144-74155285 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032415
 protein coding gene Chr9:68982362-69241246 (-)
CAST/EiJ MGP_CASTEiJ_G0034016
 protein coding gene Chr9:71921623-72200086 (-)
CBA/J MGP_CBAJ_G0034667
 protein coding gene Chr9:76444918-76727403 (-)
DBA/2J MGP_DBA2J_G0034826
 protein coding gene Chr9:69192002-69455312 (-)
FVB/NJ MGP_FVBNJ_G0034768
 protein coding gene Chr9:68511076-68773741 (-)
LP/J MGP_LPJ_G0034907
 protein coding gene Chr9:72190968-72458388 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034809
 protein coding gene Chr9:77493002-77782306 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035526
 protein coding gene Chr9:71265622-71536917 (-)
PWK/PhJ MGP_PWKPhJ_G0033720
 protein coding gene Chr9:69445467-69710301 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033553
 protein coding gene Chr9:71580786-71851311 (-)
WSB/EiJ MGP_WSBEiJ_G0034128
 protein coding gene Chr9:71194974-71463828 (-)



Homology
more
  • Human Ortholog
    TCF12, transcription factor 12
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TCF12, transcription factor 12
    Orthology source: HomoloGene, HGNC
  • Synonyms
    bHLHb20, CRS3, HEB, HsT17266, HTF4, p64, TCF-12
  • Links
    NCBI Gene ID: 6938
    neXtProt AC: NX_Q99081
    UniProt: Q99081

  • Chr Location
    15q21.3; chr15:56918090-57291261 (+)  GRCh38.p7
Human Diseases
more
  • Diseases
    1 with human TCF12 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    22 phenotypes from 5 alleles in 7 genetic backgrounds
    19 phenotypes from multigenic genotypes
    36 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a targeted null mutation exhibit postnatal lethality within two weeks of birth and a 50% reduction in the number of pro-B cells.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    53
  • GO References
    14
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    336
  • Tissues
    249
  • cDNA Data
    248
  • Literature Summary
    30
  • Comparison Matrix
    Gene Expression + Phenotype
    • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 21406 NCBI Gene Model | MGI Sequence Detail 267568 C57BL/6J ±  kb
    transcript NM_011544 RefSeq | MGI Sequence Detail 4707 C57BL/6  
    polypeptide Q61286 UniProt | EBI | MGI Sequence Detail 706 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 257
      Genomic 1
      cDNA 249
      Primer pair 5
      Other 2

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-18703
    References
    more
    • Summaries
      All 116
      Developmental Gene Expression 30
      Gene Ontology 14
      Phenotypes 36
    • Earliest
      J:18120 Sun XH, et al., Id proteins Id1 and Id2 selectively inhibit DNA binding by one class of helix-loop-helix proteins. Mol Cell Biol. 1991 Nov;11(11):5603-11
    • Latest
      J:264806 Sandberg M, et al., Genomic analysis of transcriptional networks directing progression of cell states during MGE development. Neural Dev. 2018 Sep 14;13(1):21
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    01/08/2019
    MGI 6.13     		The Jackson Laboratory