Tcf12 MGI Mouse Gene Detail - MGI:101877

Symbol

Tcf12
Name

transcription factor 12
Synonyms

ALF1, bHLHb20, HEB, HEBAlt, HTF4, HTF-4, ME1, REB

Feature Type

protein coding gene
IDs

MGI:101877
NCBI Gene: 21406
Gene Overview

MyGene.info: TCF12
Alliance

gene page
Transcription Start Sites

11 TSS

Sequence Map

Chr9:71844252-72111893 bp, - strand
From NCBI annotation of GRCm38

View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 9, 39.85 cM
Mapping Data

8 experiments

SNPs within 2kb

1335 from dbSNP Build 142
Strain Annotations

18
RFLP

1

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_101877	protein coding gene	Chr9:71842688-72111893 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0035012	protein coding gene	Chr9:71980518-72253045 (-)
A/J	MGP_AJ_G0034993	protein coding gene	Chr9:69463764-69728013 (-)
AKR/J	MGP_AKRJ_G0034922	protein coding gene	Chr9:71130169-71398641 (-)
BALB/cJ	MGP_BALBcJ_G0034985	protein coding gene	Chr9:69178675-69439803 (-)
C3H/HeJ	MGP_C3HHeJ_G0034694	protein coding gene	Chr9:71635356-71906431 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0035504	protein coding gene	Chr9:73880144-74155285 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032415	protein coding gene	Chr9:68982362-69241246 (-)
CAST/EiJ	MGP_CASTEiJ_G0034016	protein coding gene	Chr9:71921623-72200086 (-)
CBA/J	MGP_CBAJ_G0034667	protein coding gene	Chr9:76444918-76727403 (-)
DBA/2J	MGP_DBA2J_G0034826	protein coding gene	Chr9:69192002-69455312 (-)
FVB/NJ	MGP_FVBNJ_G0034768	protein coding gene	Chr9:68511076-68773741 (-)
LP/J	MGP_LPJ_G0034907	protein coding gene	Chr9:72190968-72458388 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0034809	protein coding gene	Chr9:77493002-77782306 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0035526	protein coding gene	Chr9:71265622-71536917 (-)
PWK/PhJ	MGP_PWKPhJ_G0033720	protein coding gene	Chr9:69445467-69710301 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0033553	protein coding gene	Chr9:71580786-71851311 (-)
WSB/EiJ	MGP_WSBEiJ_G0034128	protein coding gene	Chr9:71194974-71463828 (-)

Human Ortholog

TCF12, transcription factor 12

Vertebrate Orthologs

10

Human Ortholog

TCF12, transcription factor 12
Orthology source: HomoloGene, HGNC
Synonyms

bHLHb20, CRS3, HEB, HsT17266, HTF4, p64, TCF-12
Links

HGNC:11623

NCBI Gene ID: 6938

neXtProt AC: NX_Q99081

UniProt: Q99081
Chr Location

15q21.3; chr15:56918090-57291261 (+) GRCh38.p7

HomoloGene

Vertebrate Homology Class 40774
1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
HCOP

human homology predictions: TCF12
Protein SuperFamily

transcription factor 3
Gene Tree

Tcf12

Diseases

1 with human TCF12 associations

				Human Disease	Mouse Models
				craniosynostosis IDs craniosynostosis DOID:2340 ICD10CM:Q75.0 MESH:D003398 NCI:C84655 OMIM:123100 OMIM:182212 OMIM:600593 OMIM:600775 OMIM:604757 OMIM:615314 ORDO:1531 UMLS_CUI:C0010278

Click on a disease name to see all genes associated with that disease.

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Phenotype Summary

25 phenotypes from 7 alleles in 9 genetic backgrounds
19 phenotypes from multigenic genotypes
43 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	immune system	integument	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	neoplasm	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	vision/eye

Click cells to view annotations.

All Mutations and Alleles

45
Chemically induced (ENU)

4
Chemically induced (other)

1
Endonuclease-mediated

1
Gene trapped

35
Targeted

4
Genomic Mutations

1 involving Tcf12
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

64 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

Mice homozygous for a targeted null mutation exhibit postnatal lethality within two weeks of birth and a 50% reduction in the number of pro-B cells.

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All GO Annotations

44
GO References

13

External Resources

FuncBase

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell death	cell differentiation	cell population proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	nucleic acid-templated transcription	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

342
Tissues

255
cDNA Data

249
Literature Summary

31

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

GEISHA TCF12

Xenbase tcf12

ZFIN tcf12

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Tcf12 interacts with 432 markers (Mir1a-1, Mir1a-2, Mir1b, ...) View All

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All Sequences

130
RefSeq

36
UniProt

19
CCDS

CCDS23329.1, CCDS72271.1, CCDS72272.1
UniGene

171615

Ensembl

ENSMUSG00000032228 (Evidence)
NCBI Gene

21406

			Length	Strain/Species	Flank
genomic	21406	NCBI Gene Model \| MGI Sequence Detail	267642	C57BL/6J	± kb
transcript	NM_011544	RefSeq \| MGI Sequence Detail	4707	C57BL/6
polypeptide	Q61286	UniProt \| EBI \| MGI Sequence Detail	706	Not Applicable

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UniProt

19 Sequences
Protein Ontology

PR:000016176 transcription factor 12

(term hierarchy)
InterPro Domains

IPR036638 Helix-loop-helix DNA-binding domain superfamily

IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain

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All nucleic 258

Genomic 1

cDNA 250

Primer pair 5

Other 2

Microarray probesets 4

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MGD-MRK-18703

Summaries

All 124

Developmental Gene Expression 31

Gene Ontology 13

Phenotypes 43
Earliest

J:18120 Sun XH, et al., Id proteins Id1 and Id2 selectively inhibit DNA binding by one class of helix-loop-helix proteins. Mol Cell Biol. 1991 Nov;11(11):5603-11
Latest

J:275230 Qian L, et al., Suppression of ILC2 differentiation from committed T cell precursors by E protein transcription factors. J Exp Med. 2019 Apr 1;216(4):884-899

TSS for Tcf12:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90481	Chr9:72111827-72111895 (-)	32 bp
Tssr90480	Chr9:72111755-72111817 (-)	107 bp
Tssr90479	Chr9:72111701-72111712 (-)	186 bp
Tssr90478	Chr9:72111172-72111225 (-)	694 bp
Tssr90477	Chr9:72110988-72110997 (-)	900 bp
Tssr90476	Chr9:72110873-72110916 (-)	998 bp
Tssr90475	Chr9:72110834-72110870 (-)	1,041 bp
Tssr90474	Chr9:72110820-72110831 (-)	1,067 bp
Tssr2932	Chr9:71896115-71896116 (-)	215,777 bp
Tssr90457	Chr9:71896103-71896108 (-)	215,787 bp
Tssr90456	Chr9:71896047-71896102 (-)	215,818 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer & Copyright Notice Send questions and comments to User Support.	last database update 02/11/2020 MGI 6.14