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Ddx1 Gene Detail
Summary
  • Symbol
    Ddx1
  • Name
    DEAD box helicase 1
  • Synonyms
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2144727
    NCBI Gene: 104721
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:13269308-13299175 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 12, 6.40 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    250 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2144727
protein coding gene Chr12:13266974-13299214 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019605
protein coding gene Chr12:10477912-10507011 (-)
A/J MGP_AJ_G0019571
protein coding gene Chr12:10128277-10156132 (-)
AKR/J MGP_AKRJ_G0019542
protein coding gene Chr12:10734485-10764255 (-)
BALB/cJ MGP_BALBcJ_G0019548
protein coding gene Chr12:10317515-10345382 (-)
C3H/HeJ MGP_C3HHeJ_G0019353
protein coding gene Chr12:10566379-10594351 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019996
protein coding gene Chr12:10848484-10876589 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017622
protein coding gene Chr12:9803935-9831854 (-)
CAST/EiJ MGP_CASTEiJ_G0018908
protein coding gene Chr12:10452915-10481522 (-)
CBA/J MGP_CBAJ_G0019324
protein coding gene Chr12:11549149-11577147 (-)
DBA/2J MGP_DBA2J_G0019437
protein coding gene Chr12:10088958-10117188 (-)
FVB/NJ MGP_FVBNJ_G0019428
protein coding gene Chr12:9996135-10023988 (-)
LP/J MGP_LPJ_G0019508
protein coding gene Chr12:10595082-10625213 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019462
protein coding gene Chr12:11323682-11352224 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020035
protein coding gene Chr12:10368445-10396483 (-)
PWK/PhJ MGP_PWKPhJ_G0018674
protein coding gene Chr12:10157461-10185678 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018464
protein coding gene Chr12:10496493-10524717 (-)
WSB/EiJ MGP_WSBEiJ_G0018959
protein coding gene Chr12:10465730-10494909 (-)



Homology
more
  • Human Ortholog
    DDX1, DEAD-box helicase 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    DDX1, DEAD-box helicase 1
  • Synonyms
    DBP-RB, UKVH5d
  • Links
    NCBI Gene ID: 1653
    neXtProt AC: NX_Q92499
    UniProt: Q92499

  • Chr Location
    2p24.3; chr2:15591178-15634346 (+)  GRCh38

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    15 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 104721 NCBI Gene Model | MGI Sequence Detail 29868 C57BL/6J ±  kb
transcript NM_134040 RefSeq | MGI Sequence Detail 2488 FVB/N  
polypeptide Q91VR5 UniProt | EBI | MGI Sequence Detail 740 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 183
    cDNA 181
    Primer pair 1
    Other 1

    Microarray probesets 3
References
more
  • Summaries
    All 48
    Developmental Gene Expression 7
    Gene Ontology 7
    Phenotypes 15
  • Earliest
    J:81851 Fowles LF, et al., Genomic screen for genes involved in mammalian craniofacial development. Genesis. 2003 Feb;35(2):73-87
  • Latest
    J:326556 Wang Y, et al., DDX1 vesicles control calcium-dependent mitochondrial activity in mouse embryos. Nat Commun. 2022 Jul 1;13(1):3794

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/12/2024
MGI 6.23
The Jackson Laboratory