rs33553007 SNP Detail

Summary

• ID
  rs33553007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:75489050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCAATTCT ATACCCAAGT GGCTCTGCTT CTTCCTCCCA
  GACTGTCTTA ATTTGTAAAT GTGCAAGCTG CTAAGGTGAA AACCGCAGTA ACTCAGCCGC
  R
  TTTTGCGGTC CGTGAGACGT GCCCCGACTG CGACTTGCAG TGTGGGTCTC CCAGGAAGGC
  GGCGCAGTCA CATTTTTCCA AACCTGGGCT CTCGACATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45292534	mCV25094885	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss146768010	ENSMUSSNP557022	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320351202	CHEV_2_75496763	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33553007					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75489050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11822	CpG island 11822	within coordinates
Gm24574	predicted gene, 24574	538 bp upstream
Gm39859	predicted gene, 39859	within coordinates
Hnrnpa3	heterogeneous nuclear ribonucleoprotein A3	555 bp upstream
Igs15	intergenic site 15	within coordinates
Rr373373	regulatory region 373373	within coordinates
Rr559535	regulatory region 559535	within coordinates
Rr559536	regulatory region 559536	48 bp proximal
Rr559537	regulatory region 559537	207 bp proximal
Rr559538	regulatory region 559538	623 bp proximal
Tssr18457	transcription start site region 18457	350 bp upstream
Tssr18458	transcription start site region 18458	386 bp upstream
Tssr18459	transcription start site region 18459	547 bp upstream
Tssr24643	transcription start site region 24643	180 bp downstream
Tssr24644	transcription start site region 24644	1069 bp downstream