Gm39859 Gene Detail

Summary

• Symbol
  Gm39859
• Name
  predicted gene, 39859

• Feature Type
  lncRNA gene
• IDs
  MGI:5622744
  NCBI Gene: 105244210
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:75478309-75489281 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  296 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622744	lncRNA gene	Chr2:75474664-75489494 (-)
129S1/SvImJ	ENSMUSG00200004954	lncRNA gene	Chr2:72529876-72530739 (-)
A/J	ENSMUSG00195020482	lncRNA gene	Chr2:72676697-72677560 (-)
AKR/J	ENSMUSG00220002476	lncRNA gene	Chr2:72646308-72647156 (-)
BALB/cJ	ENSMUSG00180007426	lncRNA gene	Chr2:72630374-72631237 (-)
C3H/HeJ	ENSMUSG00175011261	lncRNA gene	Chr2:72753666-72754529 (-)
C57BL/6NJ	ENSMUSG00215029291	lncRNA gene	Chr2:72600724-72601572 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032227	lncRNA gene	Chr2:72074139-72075002 (-)
CBA/J	ENSMUSG00210002621	lncRNA gene	Chr2:72794720-72795583 (-)
DBA/2J	ENSMUSG00185011465	lncRNA gene	Chr2:72630549-72631412 (-)
FVB/NJ	ENSMUSG00205018650	lncRNA gene	Chr2:72091646-72092494 (-)
JF1/MsJ	ENSUMUG00000043490	lncRNA gene	Chr2:72333408-72334271 (-)
LP/J	ENSMUSG00230027245	lncRNA gene	Chr2:74434979-74435842 (-)
NOD/ShiLtJ	ENSMUSG00190010968	lncRNA gene	Chr2:72705851-72706714 (-)
NZO/HlLtJ	ENSMUSG00225003848	lncRNA gene	Chr2:82199741-82200604 (-)
PWK/PhJ	ENSLUMG00010032681	lncRNA gene	Chr2:72561832-72562695 (-)
SPRET/EiJ	ENSMSPG00010021705	lncRNA gene	Chr2:73946057-73946922 (-)
WSB/EiJ	ENSIUOG00005011549	lncRNA gene	Chr2:72758037-72758900 (-)

Homology

• Gene Tree
  Gm39859
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  53
• Chemically induced (other)
  1
• Gene trapped
  52
• Genomic Mutations
  1 involving Gm39859
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2

• Ensembl
  ENSMUSG00000120684 (Evidence)
• NCBI Gene
  105244210

Representative Sequences			Length	Strain/Species
genomic	105244210	NCBI Gene Model | MGI Sequence Detail	10973	C57BL/6J
transcript	NR_166130	RefSeq | MGI Sequence Detail	4029	ZRU/MplStud

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm39859:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr24644	Chr2:75490119-75490161 (-)	-859 bp
Tssr24643	Chr2:75489230-75489303 (-)	14 bp