rs29922181 SNP Detail

Summary

• ID
  rs29922181
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:37895289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGAGCGAC AGAATAGACC GAGAGTTTCT CTGCTTCCAA
  AGCCCTCTGT GCGTCCTGCC CTTAGAGATT GTGGCAGAAA ATCCCCTAAA CGTTTTTCAC
  R
  TCAGCGTGGT GATAGAAGAT ATAAATGATA ACCCTCCCCG TTTCCTCCAA AATAGCATTG
  TTTTGCAAAT CAATGAACTT GCGATTCCAG GCACTAGGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39629879	mCV23941055	ABI	CRAMUS_MOUSE	f	SNP		A				G		A
ss49272953	NES12721432	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G		G	A	G	A	G	G	G	A	G
ss146963873	ENSMUSSNP505068	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29922181					SNP	G	A	G	A	G	G	G	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49272953	NES12721432	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37895289 () rs orientation: forward

Symbol	Name	Function Class
Gm26672	predicted gene, 26672	within coordinates
Gm37388	predicted gene, 37388	Intron
Gm38666	predicted gene, 38666	Intron
Gm38667	predicted gene, 38667	Intron
Gm53048	predicted gene, 53048	within coordinates
Pcdha4b	protocadherin alpha 4B	Intron
Pcdhga1	protocadherin gamma subfamily A, 1	Intron
Pcdhga2	protocadherin gamma subfamily A, 2	Intron
Pcdhga3	protocadherin gamma subfamily A, 3	Intron
Pcdhga4	protocadherin gamma subfamily A, 4	Intron
Pcdhga5	protocadherin gamma subfamily A, 5	Intron
Pcdhga6	protocadherin gamma subfamily A, 6	Intron
Pcdhga7	protocadherin gamma subfamily A, 7	Intron
Pcdhga8	protocadherin gamma subfamily A, 8	Intron
Pcdhga9	protocadherin gamma subfamily A, 9	Intron
Pcdhga10	protocadherin gamma subfamily A, 10	Intron
Pcdhga11	protocadherin gamma subfamily A, 11	Intron
Pcdhgb1	protocadherin gamma subfamily B, 1	Intron
Pcdhgb2	protocadherin gamma subfamily B, 2	Intron
Pcdhgb4	protocadherin gamma subfamily B, 4	Intron
Pcdhgb5	protocadherin gamma subfamily B, 5	Intron
Pcdhgb6	protocadherin gamma subfamily B, 6	Intron
Pcdhgb7	protocadherin gamma subfamily B, 7	Intron
Pcdhgb8	protocadherin gamma subfamily B, 8	within coordinates
Rr536321	regulatory region 536321	425 bp distal