Gm53048 Pseudogene Detail

Summary

• Symbol
  Gm53048
• Name
  predicted gene, 53048

• Feature Type
  pseudogene
• IDs
  MGI:6388943
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:37835738-37973182 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  4283 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388943	pseudogene	Chr18:37835738-37973182 (+)
129S1/SvImJ	ENSMUSG00200044588	pseudogene	Chr18:34835945-34837460 (+)
A/J	ENSMUSG00195038289	pseudogene	Chr18:34987227-34988742 (+)
AKR/J	ENSMUSG00220017824	pseudogene	Chr18:34956574-34958089 (+)
BALB/cJ	ENSMUSG00180022344	pseudogene	Chr18:35436862-35438377 (+)
C3H/HeJ	ENSMUSG00175043660	pseudogene	Chr18:34951862-34953377 (+)
C57BL/6NJ	ENSMUSG00215028604	pseudogene	Chr18:34706133-34707648 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024570	pseudogene	Chr18:34567382-34568885 (+)
CBA/J	ENSMUSG00210021708	pseudogene	Chr18:34978871-34980386 (+)
DBA/2J	ENSMUSG00185020695	pseudogene	Chr18:34913509-34915024 (+)
FVB/NJ	ENSMUSG00205038239	pseudogene	Chr18:34614895-34616410 (+)
JF1/MsJ	ENSUMUG00000047295	pseudogene	Chr18:35048313-35049828 (+)
LP/J	ENSMUSG00230048817	pseudogene	Chr18:37030089-37031604 (+)
NOD/ShiLtJ	ENSMUSG00190022463	pseudogene	Chr18:34700195-34701710 (+)
NZO/HlLtJ	ENSMUSG00225047535	pseudogene	Chr18:36936929-36938444 (+)
PWK/PhJ	ENSLUMG00010012794	pseudogene	Chr18:35190620-35192135 (+)
SPRET/EiJ	ENSMSPG00010022501	pseudogene	Chr18:35227579-35229094 (+)
WSB/EiJ	ENSIUOG00005008008	pseudogene	Chr18:34692738-34694253 (+)

Homology

• Gene Tree
  Gm53048
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm53048
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118501 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118501	Ensembl Gene Model | MGI Sequence Detail	137445	C57BL/6J
transcript	ENSMUST00000239033	Ensembl | MGI Sequence Detail	2236	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:244163 Hasegawa S, et al., Distinct and Cooperative Functions for the Protocadherin-alpha, -beta and -gamma Clusters in Neuronal Survival and Axon Targeting. Front Mol Neurosci. 2016;9:155
• Latest
  J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)