rs29627716 SNP Detail

Summary

• ID
  rs29627716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:75488001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTCTCATG TCTGACTGCT GGGATTAAAG GTGTGTGCCA
  CCATCTGAAT CCATTTCTCA TCTTTCACTG GGAGAGACAG ATAAATTGCA AAGGAGTTTG
  Y
  TATGCAGAAT GTTAAAATAT GCAATTTGTT GCAGGAAAAG AAGGCTTGTC AATTGTGCTT
  TTTTTCTTAC CCTCAATAAC TTTATTTAAA TGAGATCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45346281	mCV25094861	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss146768001	ENSMUSSNP1377738	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320351196	CHEV_2_75495714	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29627716					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75488001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11822	CpG island 11822	918 bp proximal
Gm24574	predicted gene, 24574	1587 bp upstream
Gm39859	predicted gene, 39859	within coordinates
Hnrnpa3	heterogeneous nuclear ribonucleoprotein A3	1604 bp upstream
Igs15	intergenic site 15	within coordinates
Rr373373	regulatory region 373373	280 bp upstream
Rr559535	regulatory region 559535	81 bp proximal
Rr559536	regulatory region 559536	1097 bp proximal
Rr559537	regulatory region 559537	1256 bp proximal
Rr559538	regulatory region 559538	1672 bp proximal
Tssr18457	transcription start site region 18457	1399 bp upstream
Tssr18458	transcription start site region 18458	1435 bp upstream
Tssr18459	transcription start site region 18459	1596 bp upstream
Tssr24643	transcription start site region 24643	1229 bp downstream