rs29570116 SNP Detail

Summary

• ID
  rs29570116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75490116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGAG CGAGCAGGCG GGCGGCGGCC
  R
  CATTGACATT GATCCGCCGC CGCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45338977	mCV25094895	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29570116					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75490116 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11822	CpG island 11822			within coordinates
Gm24574	predicted gene, 24574			455 bp downstream
Gm39859	predicted gene, 39859			835 bp upstream
Hnrnpa3	heterogeneous nuclear ribonucleoprotein A3			Intron
				Noncoding-Transcript-Variant
Igs15	intergenic site 15			within coordinates
Rr373373	regulatory region 373373			within coordinates
Rr559535	regulatory region 559535			860 bp distal
Rr559536	regulatory region 559536			997 bp distal
Rr559537	regulatory region 559537			444 bp distal
Rr559538	regulatory region 559538			within coordinates
Tssr18457	transcription start site region 18457			681 bp downstream
Tssr18458	transcription start site region 18458			664 bp downstream
Tssr18459	transcription start site region 18459			506 bp downstream
Tssr24643	transcription start site region 24643			813 bp upstream
Tssr24644	transcription start site region 24644			3 bp downstream