rs261962219 SNP Detail

Summary

• ID
  rs261962219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156285756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCTTGGA AATTAGTTGT
  CTTGGAAAAT GGCATAATAA TTCAGAAACT GCATAACATA GTACCAATCA GAATTGCCCA
  AAGACAACTG CTATTGGTTA TTAGTTTAGA ACAATAGTTT TTTTTTGGGG GGGAGGGGCT
  TGTAGGAAGC ATTTCTGTCC TAGAACAGTT TATTAAGACC CTATTGTAGC TGGGCCAGGG
  Y
  GCACACCTTT GATCCCAGCA CCGGGGAAGC AGAGGCAGGT GGATGTCTGA GTTCAGGGCT
  AGCCTGGTCT ACAGAACAAG CACCAAGACT CTGTCTTGAA AAGCCAAGAG AACAAACAAA
  GTATTGCTCA CATCAAGATA CATTGAGTCA GATGAGTTTG TTTTTGAAGT AGTCTTTGCT
  ATGTAGTCCA TGCTGGCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363815489	MGP_WTSI_4_155575408	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261962219					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363815489	MGP_WTSI_4_155575408	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156285756 () rs orientation: forward

Symbol	Name	Function Class
AW011738	expressed sequence AW011738	1985 bp upstream
Gm46878	predicted gene, 46878	1778 bp downstream
Isg15	ISG15 ubiquitin-like modifier	503 bp upstream
Rr398932	regulatory region 398932	1700 bp upstream
Rr606695	regulatory region 606695	514 bp distal
Rr606696	regulatory region 606696	229 bp distal
Rr606697	regulatory region 606697	1390 bp proximal
Rr606698	regulatory region 606698	1410 bp proximal
Tssr40794	transcription start site region 40794	1758 bp downstream
Tssr40795	transcription start site region 40795	1993 bp upstream
Tssr45015	transcription start site region 45015	1696 bp upstream
Tssr45016	transcription start site region 45016	1633 bp upstream
Tssr45017	transcription start site region 45017	1563 bp upstream
Tssr45018	transcription start site region 45018	1262 bp upstream
Tssr45019	transcription start site region 45019	494 bp upstream
Tssr45020	transcription start site region 45020	466 bp upstream
Tssr45021	transcription start site region 45021	453 bp upstream