AW011738 Gene Detail

Summary

• Symbol
  AW011738
• Name
  expressed sequence AW011738

• Feature Type
  lncRNA gene
• IDs
  MGI:2140540
  NCBI Gene: 100382
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:156287741-156290485 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 88.62 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  339 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2140540	lncRNA gene	Chr4:156287656-156295023 (+)
129S1/SvImJ	ENSMUSG00200019761	lncRNA gene	Chr4:147322548-147329871 (+)
A/J	ENSMUSG00195020947	lncRNA gene	Chr4:148987789-148995126 (+)
AKR/J	ENSMUSG00220028562	lncRNA gene	Chr4:148564162-148571484 (+)
BALB/cJ	ENSMUSG00180002590	lncRNA gene	Chr4:146643285-146650621 (+)
C3H/HeJ	ENSMUSG00175019939	lncRNA gene	Chr4:149942971-149950307 (+)
C57BL/6NJ	ENSMUSG00215030036	lncRNA gene	Chr4:148810892-148818185 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036659	lncRNA gene	Chr4:152641075-152648580 (+)
CBA/J	ENSMUSG00210005918	lncRNA gene	Chr4:148602271-148609606 (+)
DBA/2J	ENSMUSG00185017023	lncRNA gene	Chr4:152158823-152166159 (+)
FVB/NJ	ENSMUSG00205023329	lncRNA gene	Chr4:147064939-147072264 (+)
JF1/MsJ	ENSUMUG00000000449	lncRNA gene	Chr4:155210838-155217977 (+)
LP/J	ENSMUSG00230026283	lncRNA gene	Chr4:158916729-158924066 (+)
NOD/ShiLtJ	ENSMUSG00190004274	lncRNA gene	Chr4:148268548-148275872 (+)
NZO/HlLtJ	ENSMUSG00225024700	lncRNA gene	Chr4:162881448-162888784 (+)
PWK/PhJ	ENSLUMG00010028700	lncRNA gene	Chr4:147461254-147468406 (+)
SPRET/EiJ	ENSMSPG00010026729	lncRNA gene	Chr4:149385196-149392452 (+)
WSB/EiJ	ENSIUOG00005006751	lncRNA gene	Chr4:146485668-146493005 (+)

Homology

• Gene Tree
  AW011738
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  12

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000078349 (Evidence)
• NCBI Gene
  100382

Representative Sequences			Length	Strain/Species
genomic	100382	NCBI Gene Model | MGI Sequence Detail	2745	C57BL/6J
transcript	NR_030671	RefSeq | MGI Sequence Detail	2745	C57BL/6
polypeptide	Q3U0L7	UniProt | EBI | MGI Sequence Detail	162	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 12

  cDNA 12

  
  

  Microarray probesets 3

References

• Summaries
  All 14
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for AW011738:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40795	Chr4:156287749-156287767 (+)	17 bp