Gm46878 Gene Detail

Summary

• Symbol
  Gm46878
• Name
  predicted gene, 46878

• Feature Type
  lncRNA gene
• IDs
  MGI:5826515
  NCBI Gene: 108168990
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:156270497-156283978 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  733 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5826515	lncRNA gene	Chr4:156270497-156284608 (+)
129S1/SvImJ	ENSMUSG00200019892	lncRNA gene	Chr4:147305472-147310172 (+)
A/J	ENSMUSG00195021077	lncRNA gene	Chr4:148970705-148975402 (+)
AKR/J	ENSMUSG00220027910	lncRNA gene	Chr4:148547085-148551785 (+)
BALB/cJ	ENSMUSG00180002653	lncRNA gene	Chr4:146626187-146630894 (+)
C3H/HeJ	ENSMUSG00175020161	lncRNA gene	Chr4:149925885-149930582 (+)
C57BL/6NJ	ENSMUSG00215026761	lncRNA gene	Chr4:148793798-148798508 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035760	lncRNA gene	Chr4:152624037-152628727 (+)
CBA/J	ENSMUSG00210006021	lncRNA gene	Chr4:148585177-148589884 (+)
DBA/2J	ENSMUSG00185017058	lncRNA gene	Chr4:152141733-152146430 (+)
FVB/NJ	ENSMUSG00205022838	lncRNA gene	Chr4:147047855-147052555 (+)
JF1/MsJ	ENSUMUG00000000403	lncRNA gene	Chr4:155193770-155198537 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190004193	lncRNA gene	Chr4:148251471-148256171 (+)
NZO/HlLtJ	ENSMUSG00225024763	lncRNA gene	Chr4:162864365-162869062 (+)
PWK/PhJ	ENSLUMG00010028097	lncRNA gene	Chr4:147444212-147448965 (+)
SPRET/EiJ	ENSMSPG00010024941	lncRNA gene	Chr4:149368097-149372762 (+)
WSB/EiJ	ENSIUOG00005006847	lncRNA gene	Chr4:146468593-146473300 (+)

Homology

• Gene Tree
  Gm46878
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000120951 (Evidence)
• NCBI Gene
  108168990

Representative Sequences			Length	Strain/Species
genomic	108168990	NCBI Gene Model | MGI Sequence Detail	13482	C57BL/6J
transcript	XR_001784520	RefSeq | MGI Sequence Detail	4736	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm46878:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40793	Chr4:156270636-156270645 (+)	144 bp