rs250289298 SNP Detail

Summary

• ID
  rs250289298
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:75488600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ataagacac agcctaccac cccccacccc
  agattcctca gccagtttcc aggcaccata ccctagtatg gttctggaat acctagagac
  agagtaagac aaagcccacc taccccagga ttccactaag gtgctttaaa ttggtcctgc
  R
  ggctcacttc aggctctatc ttggtaacgg gagaccccag catgctggac ttctacagaa
  taaaaacagt gtttgcgttt acatactatt agaatccggg gtatcattct tcgTTACAGT
  GGGTGTTTCG AGACTACCTA ATCCTATGTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320351200	CHEV_2_75496313	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250289298					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75488600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11822	CpG island 11822	319 bp proximal
Gm24574	predicted gene, 24574	988 bp upstream
Gm39859	predicted gene, 39859	within coordinates
Hnrnpa3	heterogeneous nuclear ribonucleoprotein A3	1005 bp upstream
Igs15	intergenic site 15	within coordinates
Rr373373	regulatory region 373373	within coordinates
Rr559535	regulatory region 559535	within coordinates
Rr559536	regulatory region 559536	498 bp proximal
Rr559537	regulatory region 559537	657 bp proximal
Rr559538	regulatory region 559538	1073 bp proximal
Tssr18457	transcription start site region 18457	800 bp upstream
Tssr18458	transcription start site region 18458	836 bp upstream
Tssr18459	transcription start site region 18459	997 bp upstream
Tssr24643	transcription start site region 24643	630 bp downstream
Tssr24644	transcription start site region 24644	1519 bp downstream