rs242202522 SNP Detail

Summary

• ID
  rs242202522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:75489153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTCTATA CCCAAGTGGC
  TCTGCTTCTT CCTCCCAGAC TGTCTTAATT TGTAAATGTG CAAGCTGCTA AGGTGAAAAC
  CGCAGTAACT CAGCCGCGTT TTGCGGTCCG TGAGACGTGC CCCGACTGCG ACTTGCAGTG
  TGGGTCTCCC AGGAAGGCGG CGCAGTCACA TTTTTCCAAA CCTGGGCTCT CGACATTTAG
  R
  AAGCCGCGAG GGAGGCGAAG ATGGTCAACT GGCTTTCTTA CAACCTTAAG TCTCAAGTCA
  GAAAAGCGTG ACTTTCCATT TGGCTCTGGA ATGGAGGTGA ACTCGGAAAT GGAGACCCGC
  AGGCGCGCGG GGGAGGGGCG AGAGGGGCCA GAAGAAAGGG AAAGGCCTTT CTCTAAGCTG
  ACGCGCGGTC ACGCGGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354505096	MGP_WTSI_2_75496866	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242202522					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354505096	MGP_WTSI_2_75496866	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75489153 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11822	CpG island 11822	within coordinates
Gm24574	predicted gene, 24574	435 bp upstream
Gm39859	predicted gene, 39859	within coordinates
Hnrnpa3	heterogeneous nuclear ribonucleoprotein A3	452 bp upstream
Igs15	intergenic site 15	within coordinates
Rr373373	regulatory region 373373	within coordinates
Rr559535	regulatory region 559535	within coordinates
Rr559536	regulatory region 559536	34 bp distal
Rr559537	regulatory region 559537	104 bp proximal
Rr559538	regulatory region 559538	520 bp proximal
Tssr18457	transcription start site region 18457	247 bp upstream
Tssr18458	transcription start site region 18458	283 bp upstream
Tssr18459	transcription start site region 18459	444 bp upstream
Tssr24643	transcription start site region 24643	77 bp downstream
Tssr24644	transcription start site region 24644	966 bp downstream