rs231400256 SNP Detail

Summary

• ID
  rs231400256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75490009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGGAGAC CGGGACGATC
  GTCCCGCGCT TTGCGCTGAG GGCGGTGGGA GGGGGAGGGG AGCGGGCCGG GTGGCCTCCT
  CCGGGCCCTC CGTCGGCCTG GTCCTCTCGG TCGGCCGCAC CGGCAGCCCT CGAAGACGCG
  GCGGGGCCGG GGAGTGGCTC GGCAGCCGGG CGAGGATGCC CTCGGGCTGC GCGGCCTGAC
  Y
  TAGCGAGGCC GCGGGCGGCA TGGCGGGCCT CCGCGGGAGC GGTTGGGAGG AGGCGGTGGG
  GGAGGGGAGG AGCACATCCG GGCGAGCGAG CAGGCGGGCG GCGGCCGCAT TGACATTGAT
  CCGCCGCCGC CGCGTTACGA AATGGCGCAG TGGCCCGCAA TGGCCGCCGC CTGGCTACGC
  CGCCAAGAAG GAGTGCGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354505109	MGP_WTSI_2_75497722	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231400256					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354505109	MGP_WTSI_2_75497722	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75490009 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11822	CpG island 11822			within coordinates
Gm24574	predicted gene, 24574			348 bp downstream
Gm39859	predicted gene, 39859			728 bp upstream
Hnrnpa3	heterogeneous nuclear ribonucleoprotein A3			Intron
				Noncoding-Transcript-Variant
Igs15	intergenic site 15			within coordinates
Rr373373	regulatory region 373373			within coordinates
Rr559535	regulatory region 559535			753 bp distal
Rr559536	regulatory region 559536			890 bp distal
Rr559537	regulatory region 559537			337 bp distal
Rr559538	regulatory region 559538			within coordinates
Tssr18457	transcription start site region 18457			574 bp downstream
Tssr18458	transcription start site region 18458			557 bp downstream
Tssr18459	transcription start site region 18459			399 bp downstream
Tssr24643	transcription start site region 24643			706 bp upstream
Tssr24644	transcription start site region 24644			110 bp downstream