rs228226562 SNP Detail

Summary

• ID
  rs228226562
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75490612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGGTGCT TCCTAACCCG
  CTGCTTGTGC TCAAGTATTT GGAATGAGAG TATTTACAGC GTCCTGTGGT TGAAGTCTTA
  ACCATTTCGG GGGTTTGAGT GTAGATGTGT TTACTTGGAG CTTAATATTT TTATTGATCT
  AATTTCTCAT ACTTCGGATT GGCCCGGATT TTGGTTTTCC TGGATTTTGG TTTTAGAGAA
  M
  TGCGACCACA CTAGAAAATA CCACGATTAC GAGAATTTTG TGTGTATAGA GATGCTTTTT
  GTGTATTGTC AAATTCATTT ATGCGAGGCT TGAATAAAGG GGTTTTACGT GAATTTGGGT
  AGTTGGGTTT CTGGTATGTG GCTGTCTGCA TATTGAATGT TCTAACTAAT ATTTCCAGAA
  GATGGAAGAA AGTGAGCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354505115	MGP_WTSI_2_75498325	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228226562					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354505115	MGP_WTSI_2_75498325	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75490612 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11822	CpG island 11822			188 bp distal
Gm24574	predicted gene, 24574			951 bp downstream
Gm39859	predicted gene, 39859			1331 bp upstream
Hnrnpa3	heterogeneous nuclear ribonucleoprotein A3			Intron
				Noncoding-Transcript-Variant
Igs15	intergenic site 15			within coordinates
Rr373373	regulatory region 373373			within coordinates
Rr559535	regulatory region 559535			1356 bp distal
Rr559536	regulatory region 559536			1493 bp distal
Rr559537	regulatory region 559537			940 bp distal
Rr559538	regulatory region 559538			within coordinates
Tssr18457	transcription start site region 18457			1177 bp downstream
Tssr18458	transcription start site region 18458			1160 bp downstream
Tssr18459	transcription start site region 18459			1002 bp downstream
Tssr24643	transcription start site region 24643			1309 bp upstream
Tssr24644	transcription start site region 24644			451 bp upstream