rs218058980 SNP Detail

Summary

• ID
  rs218058980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:75487742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTTTTG AGTTGGTTTT
  GGTCATGGCG TTTATTACCC AGCAACATAA AGCAAACTAG AATCAGGGTA TCATGTAGCC
  CAGGGAGGCC TCATACCCCA CTTTGTAGCT GTGAATGTCC TTGAGCCCTT TTGAGACAGG
  GTCTCTGTAT CCTAGAGCTA GATGTAGGTC AGGCTGGCCT GGTACCCCCA GAGATCCTTC
  Y
  GCATCTGCCT CCTGGTTGCT GTGATTAAAG TCCTGAGACA CCACACTTGG CTGCTCTGAG
  TTTTTTCAAT CTCCCACCTC CAATCCCTAA ATGCTGTGGG TTTGAGGGAT TAGGAGCTGT
  GTCACCTGCC CAGTTTGCAG AGATGAGGAT CCAGGCCTAG GTCTCATGTC TGACTGCTGG
  GATTAAAGGT GTGTGCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354505063	MGP_WTSI_2_75495455	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs218058980					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354505063	MGP_WTSI_2_75495455	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75487742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11822	CpG island 11822	1177 bp proximal
Gm24574	predicted gene, 24574	1846 bp upstream
Gm39859	predicted gene, 39859	within coordinates
Hnrnpa3	heterogeneous nuclear ribonucleoprotein A3	1863 bp upstream
Igs15	intergenic site 15	within coordinates
Rr373373	regulatory region 373373	539 bp upstream
Rr559535	regulatory region 559535	340 bp proximal
Rr559536	regulatory region 559536	1356 bp proximal
Rr559537	regulatory region 559537	1515 bp proximal
Rr559538	regulatory region 559538	1931 bp proximal
Tssr18457	transcription start site region 18457	1658 bp upstream
Tssr18458	transcription start site region 18458	1694 bp upstream
Tssr18459	transcription start site region 18459	1855 bp upstream
Tssr24643	transcription start site region 24643	1488 bp downstream