Snord3b4 Gene Detail

Summary

• Symbol
  Snord3b4
• Name
  small nucleolar RNA, C/D box 3B4
• Synonyms
  1810064A23Rik, Rnu3b-4, Rnu3b4

• Feature Type
  snoRNA gene
  BioType Conflict
  
• IDs
  MGI:97988
  NCBI Gene: 19861
• Member of
  Rnu3b cluster
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:87353112-87353329 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 52.11 cM, cytoband C-D
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  1 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97988	snoRNA gene	Chr11:87353112-87353329 (+)
129S1/SvImJ	ENSMUSG00200020334	snoRNA gene	Chr11:84482556-84482771 (+)
129S1/SvImJ	ENSMUSG00200020321	snoRNA gene	Chr11:84482556-84482770 (+)
A/J	ENSMUSG00195009208	snoRNA gene	Chr11:84337383-84337597 (+)
A/J	ENSMUSG00195009247	snoRNA gene	Chr11:84337383-84337598 (+)
AKR/J	ENSMUSG00220012163	snoRNA gene	Chr11:84536948-84537163 (+)
AKR/J	ENSMUSG00220012146	snoRNA gene	Chr11:84536948-84537162 (+)
BALB/cJ	ENSMUSG00180011857	snoRNA gene	Chr11:84544334-84544549 (+)
BALB/cJ	ENSMUSG00180011821	snoRNA gene	Chr11:84544334-84544548 (+)
C3H/HeJ	ENSMUSG00175033520	snoRNA gene	Chr11:84483996-84484210 (+)
C3H/HeJ	ENSMUSG00175033604	snoRNA gene	Chr11:84483996-84484211 (+)
C57BL/6NJ	ENSMUSG00215031256	snoRNA gene	Chr11:84128711-84128925 (+)
C57BL/6NJ	ENSMUSG00215031467	snoRNA gene	Chr11:84128711-84128926 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017164	snoRNA gene	Chr11:84039401-84039615 (+)
CAST/EiJ	ENSTCUG00005017194	snoRNA gene	Chr11:84039401-84039616 (+)
CBA/J	ENSMUSG00210040234	snoRNA gene	Chr11:84301541-84301755 (+)
CBA/J	ENSMUSG00210040354	snoRNA gene	Chr11:84301541-84301756 (+)
DBA/2J	ENSMUSG00185020556	snoRNA gene	Chr11:84618259-84618473 (+)
DBA/2J	ENSMUSG00185020606	snoRNA gene	Chr11:84618259-84618474 (+)
FVB/NJ	ENSMUSG00205023982	snoRNA gene	Chr11:84497316-84497530 (+)
FVB/NJ	ENSMUSG00205024162	snoRNA gene	Chr11:84497316-84497531 (+)
JF1/MsJ	ENSUMUG00000026191	snoRNA gene	Chr11:84942892-84943106 (+)
JF1/MsJ	ENSUMUG00000026259	snoRNA gene	Chr11:84942892-84943107 (+)
LP/J	ENSMUSG00230030512	snoRNA gene	Chr11:85651525-85651739 (+)
LP/J	ENSMUSG00230030328	snoRNA gene	Chr11:85651525-85651740 (+)
NOD/ShiLtJ	ENSMUSG00190019761	snoRNA gene	Chr11:84644157-84644371 (+)
NOD/ShiLtJ	ENSMUSG00190019826	snoRNA gene	Chr11:84644157-84644372 (+)
NZO/HlLtJ	ENSMUSG00225039686	snoRNA gene	Chr11:87767631-87767846 (+)
NZO/HlLtJ	ENSMUSG00225039827	snoRNA gene	Chr11:87767631-87767845 (+)
PWK/PhJ	ENSLUMG00010033269	snoRNA gene	Chr11:84469380-84469594 (+)
PWK/PhJ	ENSLUMG00010033298	snoRNA gene	Chr11:84469380-84469595 (+)
SPRET/EiJ	ENSMSPG00010030623	snoRNA gene	Chr11:84907893-84908107 (+)
SPRET/EiJ	ENSMSPG00010030673	snoRNA gene	Chr11:84907893-84908108 (+)
WSB/EiJ	ENSIUOG00005008359	snoRNA gene	Chr11:84456233-84456448 (+)
WSB/EiJ	ENSIUOG00005008323	snoRNA gene	Chr11:84456233-84456447 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Snord3b4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  1

• Ensembl
  ENSMUSG00000119851 (Evidence), ENSMUSG00002074955 (Evidence)
• NCBI Gene
  19861

Representative Sequences			Length	Strain/Species
genomic	19861	NCBI Gene Model | MGI Sequence Detail	218	C57BL/6J
transcript	NR_002843	RefSeq | MGI Sequence Detail	218	ZRU/MplStud

Molecular
Reagents

• All nucleic 7

  Genomic 1

  cDNA 3

  Other 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGD-MRK-13980, MGD-MRK-13996, MGI:1925747, MGI:6434257

References

• Summaries
  All 18

  Phenotypes 5
• Earliest
  J:10885 Mazan S, et al., Organization of the gene family encoding mouse U3B RNA: role of gene conversions in its concerted evolution. Gene. 1990 Oct 15;94(2):263-72
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52