Snord3b3 Gene Detail

Summary

• Symbol
  Snord3b3
• Name
  small nucleolar RNA, C/D box 3B3
• Synonyms
  Rnu3b-3, Rnu3b3

• Feature Type
  snoRNA gene
  BioType Conflict
  
• IDs
  MGI:97987
  NCBI Gene: 19860
• Member of
  Rnu3b cluster
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:87339453-87339667 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 52.10 cM, cytoband C-D
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  4 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97987	snoRNA gene	Chr11:87339453-87339668 (+)
129S1/SvImJ	ENSMUSG00200020340	snoRNA gene	Chr11:84468898-84469113 (+)
129S1/SvImJ	ENSMUSG00200020323	snoRNA gene	Chr11:84468898-84469112 (+)
A/J	ENSMUSG00195009215	snoRNA gene	Chr11:84323728-84323942 (+)
A/J	ENSMUSG00195009257	snoRNA gene	Chr11:84323728-84323943 (+)
AKR/J	ENSMUSG00220012175	snoRNA gene	Chr11:84523292-84523507 (+)
AKR/J	ENSMUSG00220012151	snoRNA gene	Chr11:84523292-84523506 (+)
BALB/cJ	ENSMUSG00180011831	snoRNA gene	Chr11:84530683-84530897 (+)
BALB/cJ	ENSMUSG00180011866	snoRNA gene	Chr11:84530683-84530898 (+)
C3H/HeJ	ENSMUSG00175033644	snoRNA gene	Chr11:84470339-84470554 (+)
C3H/HeJ	ENSMUSG00175033533	snoRNA gene	Chr11:84470339-84470553 (+)
C57BL/6NJ	ENSMUSG00215031348	snoRNA gene	Chr11:84115053-84115267 (+)
C57BL/6NJ	ENSMUSG00215031535	snoRNA gene	Chr11:84115053-84115268 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017173	snoRNA gene	Chr11:84025559-84025773 (+)
CAST/EiJ	ENSTCUG00005017210	snoRNA gene	Chr11:84025559-84025774 (+)
CBA/J	ENSMUSG00210040276	snoRNA gene	Chr11:84287886-84288100 (+)
CBA/J	ENSMUSG00210040379	snoRNA gene	Chr11:84287886-84288101 (+)
DBA/2J	ENSMUSG00185020566	snoRNA gene	Chr11:84604604-84604818 (+)
DBA/2J	ENSMUSG00185020632	snoRNA gene	Chr11:84604604-84604819 (+)
FVB/NJ	ENSMUSG00205024234	snoRNA gene	Chr11:84483666-84483881 (+)
FVB/NJ	ENSMUSG00205024022	snoRNA gene	Chr11:84483666-84483880 (+)
JF1/MsJ	ENSUMUG00000026335	snoRNA gene	Chr11:84928940-84929155 (+)
JF1/MsJ	ENSUMUG00000026295	snoRNA gene	Chr11:84928940-84929154 (+)
LP/J	ENSMUSG00230030501	snoRNA gene	Chr11:85637869-85638084 (+)
LP/J	ENSMUSG00230030418	snoRNA gene	Chr11:85637869-85638083 (+)
NOD/ShiLtJ	ENSMUSG00190019860	snoRNA gene	Chr11:84630504-84630719 (+)
NOD/ShiLtJ	ENSMUSG00190019787	snoRNA gene	Chr11:84630504-84630718 (+)
NZO/HlLtJ	ENSMUSG00225039818	snoRNA gene	Chr11:87753975-87754190 (+)
NZO/HlLtJ	ENSMUSG00225039732	snoRNA gene	Chr11:87753975-87754189 (+)
PWK/PhJ	ENSLUMG00010033221	snoRNA gene	Chr11:84455912-84456127 (+)
PWK/PhJ	ENSLUMG00010033172	snoRNA gene	Chr11:84455912-84456126 (+)
SPRET/EiJ	ENSMSPG00010030631	snoRNA gene	Chr11:84893589-84893803 (+)
SPRET/EiJ	ENSMSPG00010030707	snoRNA gene	Chr11:84893589-84893804 (+)
WSB/EiJ	ENSIUOG00005008329	snoRNA gene	Chr11:84442774-84442988 (+)
WSB/EiJ	ENSIUOG00005008371	snoRNA gene	Chr11:84442774-84442989 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Snord3b3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  1

• Ensembl
  ENSMUSG00000119648 (Evidence), ENSMUSG00002075453 (Evidence)
• NCBI Gene
  19860

Representative Sequences			Length	Strain/Species
genomic	19860	NCBI Gene Model | MGI Sequence Detail	215	C57BL/6J
transcript	NR_004416	RefSeq | MGI Sequence Detail	215	Not Specified

Molecular
Reagents

• All nucleic 4

  Genomic 1

  Other 3

Other
Accession IDs

MGD-MRK-13979, MGD-MRK-13995, MGI:6434253

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:9495 Mazan S, et al., Structure and organization of mouse U3B RNA functional genes. J Biol Chem. 1988 Dec 25;263(36):19461-7
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Snord3b3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103925	Chr11:87338713-87338717 (+)	-738 bp