Snord3b2 Gene Detail

Summary

• Symbol
  Snord3b2
• Name
  small nucleolar RNA, C/D box 3B2
• Synonyms
  Rnu3b-2, Rnu3b2

• Feature Type
  snoRNA gene
  BioType Conflict
  
• IDs
  MGI:97986
  NCBI Gene: 19859
• Member of
  Rnu3b cluster
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:87362194-87362408 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 52.11 cM, cytoband C-D
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  10 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97986	snoRNA gene	Chr11:87362194-87362409 (+)
129S1/SvImJ	ENSMUSG00200020551	snoRNA gene	Chr11:84491638-84491853 (+)
129S1/SvImJ	ENSMUSG00200020550	snoRNA gene	Chr11:84491638-84491852 (+)
A/J	ENSMUSG00195009642	snoRNA gene	Chr11:84346465-84346679 (+)
A/J	ENSMUSG00195009648	snoRNA gene	Chr11:84346465-84346680 (+)
AKR/J	ENSMUSG00220012192	snoRNA gene	Chr11:84546033-84546248 (+)
AKR/J	ENSMUSG00220012184	snoRNA gene	Chr11:84546033-84546247 (+)
BALB/cJ	ENSMUSG00180011436	snoRNA gene	Chr11:84553217-84553431 (+)
BALB/cJ	ENSMUSG00180011441	snoRNA gene	Chr11:84553217-84553432 (+)
C3H/HeJ	ENSMUSG00175033460	snoRNA gene	Chr11:84493080-84493294 (+)
C3H/HeJ	ENSMUSG00175033469	snoRNA gene	Chr11:84493080-84493295 (+)
C57BL/6NJ	ENSMUSG00215030754	snoRNA gene	Chr11:84137793-84138008 (+)
C57BL/6NJ	ENSMUSG00215030702	snoRNA gene	Chr11:84137793-84138007 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017128	snoRNA gene	Chr11:84048287-84048501 (+)
CAST/EiJ	ENSTCUG00005017134	snoRNA gene	Chr11:84048287-84048502 (+)
CBA/J	ENSMUSG00210039705	snoRNA gene	Chr11:84310624-84310839 (+)
CBA/J	ENSMUSG00210039685	snoRNA gene	Chr11:84310624-84310838 (+)
DBA/2J	ENSMUSG00185020940	snoRNA gene	Chr11:84627342-84627556 (+)
DBA/2J	ENSMUSG00185020950	snoRNA gene	Chr11:84627342-84627557 (+)
FVB/NJ	ENSMUSG00205022598	snoRNA gene	Chr11:84506203-84506418 (+)
FVB/NJ	ENSMUSG00205022561	snoRNA gene	Chr11:84506203-84506417 (+)
JF1/MsJ	ENSUMUG00000030551	snoRNA gene	Chr11:84951384-84951599 (+)
JF1/MsJ	ENSUMUG00000030530	snoRNA gene	Chr11:84951384-84951598 (+)
LP/J	ENSMUSG00230030349	snoRNA gene	Chr11:85660608-85660822 (+)
LP/J	ENSMUSG00230030439	snoRNA gene	Chr11:85660608-85660823 (+)
NOD/ShiLtJ	ENSMUSG00190020748	snoRNA gene	Chr11:84653039-84653254 (+)
NOD/ShiLtJ	ENSMUSG00190020730	snoRNA gene	Chr11:84653039-84653253 (+)
NZO/HlLtJ	ENSMUSG00225039696	snoRNA gene	Chr11:87776511-87776725 (+)
NZO/HlLtJ	ENSMUSG00225039738	snoRNA gene	Chr11:87776511-87776726 (+)
PWK/PhJ	ENSLUMG00010033851	snoRNA gene	Chr11:84486324-84486538 (+)
PWK/PhJ	ENSLUMG00010033870	snoRNA gene	Chr11:84486324-84486539 (+)
SPRET/EiJ	ENSMSPG00010030844	snoRNA gene	Chr11:84916707-84916921 (+)
SPRET/EiJ	ENSMSPG00010030865	snoRNA gene	Chr11:84916707-84916922 (+)
WSB/EiJ	ENSIUOG00005007998	snoRNA gene	Chr11:84465111-84465325 (+)
WSB/EiJ	ENSIUOG00005008009	snoRNA gene	Chr11:84465111-84465326 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Snord3b2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  1

• Ensembl
  ENSMUSG00000119761 (Evidence), ENSMUSG00002075931 (Evidence)
• NCBI Gene
  19859

Representative Sequences			Length	Strain/Species
genomic	19859	NCBI Gene Model | MGI Sequence Detail	215	C57BL/6J
transcript	NR_027863	RefSeq | MGI Sequence Detail	215	Not Specified

Molecular
Reagents

• All nucleic 5

  Genomic 1

  Other 4

Other
Accession IDs

MGD-MRK-13978, MGD-MRK-13994, MGI:6434252

References

• Summaries
  All 14

  Phenotypes 5
• Earliest
  J:9495 Mazan S, et al., Structure and organization of mouse U3B RNA functional genes. J Biol Chem. 1988 Dec 25;263(36):19461-7
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52