Snord3b1 Gene Detail

Summary

• Symbol
  Snord3b1
• Name
  small nucleolar RNA, C/D box 3B1
• Synonyms
  Rnu3b-1, Rnu3b1

• Feature Type
  snoRNA gene
  BioType Conflict
  
• IDs
  MGI:97985
  NCBI Gene: 19858
• Member of
  Rnu3b cluster
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:87334063-87334277 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 52.10 cM, cytoband C-D
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  5 from dbSNP Build 142
• Strain Annotations
  38

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97985	snoRNA gene	Chr11:87334063-87334278 (+)
129S1/SvImJ	ENSMUSG00200020336	snoRNA gene	Chr11:84463507-84463722 (+)
129S1/SvImJ	ENSMUSG00200020316	snoRNA gene	Chr11:84463507-84463721 (+)
A/J	ENSMUSG00195009199	snoRNA gene	Chr11:84318337-84318551 (+)
A/J	ENSMUSG00195009252	snoRNA gene	Chr11:84318337-84318552 (+)
AKR/J	ENSMUSG00220012168	snoRNA gene	Chr11:84517903-84518118 (+)
AKR/J	ENSMUSG00220012142	snoRNA gene	Chr11:84517903-84518117 (+)
BALB/cJ	ENSMUSG00180011817	snoRNA gene	Chr11:84525286-84525500 (+)
BALB/cJ	ENSMUSG00180011863	snoRNA gene	Chr11:84525286-84525501 (+)
C3H/HeJ	ENSMUSG00175033490	snoRNA gene	Chr11:84464950-84465164 (+)
C3H/HeJ	ENSMUSG00175033625	snoRNA gene	Chr11:84464950-84465165 (+)
C57BL/6NJ	ENSMUSG00215031184	snoRNA gene	Chr11:84109662-84109876 (+)
C57BL/6NJ	ENSMUSG00215031504	snoRNA gene	Chr11:84109662-84109877 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017204	snoRNA gene	Chr11:84020184-84020399 (+)
CAST/EiJ	ENSTCUG00005017159	snoRNA gene	Chr11:84020184-84020398 (+)
CBA/J	ENSMUSG00210040374	snoRNA gene	Chr11:84282496-84282711 (+)
CBA/J	ENSMUSG00210040200	snoRNA gene	Chr11:84282496-84282710 (+)
DBA/2J	ENSMUSG00185020542	snoRNA gene	Chr11:84599214-84599428 (+)
DBA/2J	ENSMUSG00185020622	snoRNA gene	Chr11:84599214-84599429 (+)
FVB/NJ	ENSMUSG00205023959	snoRNA gene	Chr11:84478265-84478479 (+)
FVB/NJ	ENSMUSG00205024212	snoRNA gene	Chr11:84478265-84478480 (+)
JF1/MsJ	ENSUMUG00000026313	snoRNA gene	Chr11:84922991-84923206 (+)
JF1/MsJ	ENSUMUG00000026279	snoRNA gene	Chr11:84922991-84923205 (+)
LP/J	ENSMUSG00230030559	snoRNA gene	Chr11:85632480-85632695 (+)
LP/J	ENSMUSG00230030296	snoRNA gene	Chr11:85632480-85632694 (+)
NOD/ShiLtJ	ENSMUSG00190019849	snoRNA gene	Chr11:84625102-84625317 (+)
NOD/ShiLtJ	ENSMUSG00190019747	snoRNA gene	Chr11:84625102-84625316 (+)
NZO/HlLtJ	ENSMUSG00225039670	snoRNA gene	Chr11:87748583-87748797 (+)
NZO/HlLtJ	ENSMUSG00225039855	snoRNA gene	Chr11:87748583-87748798 (+)
PWK/PhJ	ENSLUMG00010033255	snoRNA gene	Chr11:84449968-84450182 (+)
PWK/PhJ	ENSLUMG00010033322	snoRNA gene	Chr11:84449968-84450183 (+)
PWK/PhJ	ENSLUMG00010036110	snoRNA gene	Chr11:84494793-84495008 (+)
PWK/PhJ	ENSLUMG00010035970	snoRNA gene	Chr11:84503268-84503483 (+)
PWK/PhJ	ENSLUMG00010036096	snoRNA gene	Chr11:84477849-84478064 (+)
SPRET/EiJ	ENSMSPG00010030588	snoRNA gene	Chr11:84882637-84882851 (+)
SPRET/EiJ	ENSMSPG00010030687	snoRNA gene	Chr11:84882637-84882852 (+)
WSB/EiJ	ENSIUOG00005008366	snoRNA gene	Chr11:84437390-84437605 (+)
WSB/EiJ	ENSIUOG00005008319	snoRNA gene	Chr11:84437390-84437604 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Snord3b1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  1

• Ensembl
  ENSMUSG00000119262 (Evidence), ENSMUSG00002076650 (Evidence)
• NCBI Gene
  19858

Representative Sequences			Length	Strain/Species
genomic	19858	NCBI Gene Model | MGI Sequence Detail	215	C57BL/6J
transcript	NR_004415	RefSeq | MGI Sequence Detail	215	Not Specified

Molecular
Reagents

• All nucleic 5

  Genomic 1

  Other 4

  
  

  Microarray probesets 4

Other
Accession IDs

MGD-MRK-13977, MGD-MRK-13993, MGI:6434250

References

• Summaries
  All 14

  Phenotypes 5
• Earliest
  J:9495 Mazan S, et al., Structure and organization of mouse U3B RNA functional genes. J Biol Chem. 1988 Dec 25;263(36):19461-7
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52