Hoxblinc Gene Detail

Summary

• Symbol
  Hoxblinc
• Name
  Hoxb locus associated lincRNA
• Synonyms
  Gm57480, Hoxblinc

• Feature Type
  lncRNA gene
• IDs
  MGI:7511523
  NCBI Gene: 128462382
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:96205632-96207923 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic

Strain
Comparison

• SNPs within 2kb
  15 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7511523	lncRNA gene	Chr11:96205632-96207923 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Expression

• Literature Summary
  1

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  1

• NCBI Gene
  128462382

Representative Sequences			Length	Strain/Species
genomic	128462382	NCBI Gene Model | MGI Sequence Detail	2292	C57BL/6J
transcript	NR_183915	RefSeq | MGI Sequence Detail	2582	C57BL/6

Protein
Information

• EC
  128462382

References

• Summaries
  All 6

  Developmental Gene Expression 1
• Earliest
  J:345498 Deng C, et al., HoxBlinc RNA Recruits Set1/MLL Complexes to Activate Hox Gene Expression Patterns and Mesoderm Lineage Development. Cell Rep. 2016 Jan 5;14(1):103-114
• Latest
  J:336097 Afzal Z, et al., Shared retinoic acid responsive enhancers coordinately regulate nascent transcription of Hoxb coding and non-coding RNAs in the developing mouse neural tube. Development. 2023 May 15;150(10)

TSS for Hoxblinc:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104506	Chr11:96205484-96205490 (+)	-145 bp
Tssr104507	Chr11:96205605-96205616 (+)	-21 bp
Tssr104508	Chr11:96205622-96205661 (+)	10 bp