Rr36 Other Genome Feature Detail

Summary

• Symbol
  Rr36
• Name
  regulatory region 36
• Synonyms
  DE-RARE

• Feature Type
  response element
• IDs
  MGI:5617036
• Regulates expression of
  Hoxb9, Hoxb8, Hoxb6 ... (6 regulated genes)

Location &
Maps

• Sequence Map
  Chr11:96201561-96201577 bp

  From MGI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI
• chr11:96201561-96201577 (GRCm39)

• Genetic Map
  Chromosome 11, Syntenic

Strain
Comparison

• SNPs within 2kb
  55 from dbSNP Build 142

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  4 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Find Mice (IMSR)
  0 strains or lines available

References

• Summaries
  All 5

  Phenotypes 4
• Earliest
  J:208763 Ahn Y, et al., Long-range regulation by shared retinoic acid response elements modulates dynamic expression of posterior Hoxb genes in CNS development. Dev Biol. 2014 Apr 1;388(1):134-44
• Latest
  J:336097 Afzal Z, et al., Shared retinoic acid responsive enhancers coordinately regulate nascent transcription of Hoxb coding and non-coding RNAs in the developing mouse neural tube. Development. 2023 May 15;150(10)

Rr36 regulates expression of:

Feature	Feature Type	Location	Reference
Hoxb9, homeobox B9	protein coding gene	Chr11:96162283-96167421 (+)	J:336097
Hoxb8, homeobox B8	protein coding gene	Chr11:96172731-96176141 (+)	J:208763
Hoxb6, homeobox B6	protein coding gene	Chr11:96183647-96192395 (+)	J:208763
Hoxb5, homeobox B5	protein coding gene	Chr11:96194338-96196947 (+)	J:208763
Hoxblinc, Hoxb locus associated lincRNA	lncRNA gene	Chr11:96206444-96209025 (+)	J:336097
Hoxb1, homeobox B1	protein coding gene	Chr11:96256578-96259082 (+)	J:336097