Gm35650 Gene Detail

Summary

• Symbol
  Gm35650
• Name
  predicted gene, 35650

• Feature Type
  lncRNA gene
• IDs
  MGI:5594809
  NCBI Gene: 102639309
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:94398225-94408867 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  347 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594809	lncRNA gene	Chr11:94398221-94409408 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm35650
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm35650
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  2

• Ensembl
  ENSMUSG00000134177 (Evidence)
• NCBI Gene
  102639309

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000134177	Ensembl Gene Model | MGI Sequence Detail	10643	C57BL/6J
transcript	ENSMUST00000322816	Ensembl | MGI Sequence Detail	716	Not Applicable

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm35650:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104206	Chr11:94398262-94398277 (+)	45 bp
Tssr104207	Chr11:94398286-94398300 (+)	68 bp
Tssr104208	Chr11:94398314-94398326 (+)	95 bp