Gm35117 Gene Detail

Summary

• Symbol
  Gm35117
• Name
  predicted gene, 35117

• Feature Type
  lncRNA gene
• IDs
  MGI:5594276
  NCBI Gene: 102638588
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:75185983-75188885 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594276	lncRNA gene	Chr11:75144890-75188885 (-)
129S1/SvImJ	ENSMUSG00200051878	lncRNA gene	Chr11:72302894-72305504 (-)
A/J	ENSMUSG00195046237	lncRNA gene	Chr11:72174106-72176686 (-)
AKR/J	ENSMUSG00220049007	lncRNA gene	Chr11:72396472-72399082 (-)
BALB/cJ	ENSMUSG00180042555	lncRNA gene	Chr11:72369728-72372338 (-)
C3H/HeJ	ENSMUSG00175043400	lncRNA gene	Chr11:72339642-72342251 (-)
C57BL/6NJ	ENSMUSG00215042899	lncRNA gene	Chr11:71962521-71965101 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053684	lncRNA gene	Chr11:71872254-71874824 (-)
CBA/J	ENSMUSG00210047252	lncRNA gene	Chr11:72158125-72160734 (-)
DBA/2J	ENSMUSG00185039961	lncRNA gene	Chr11:72428105-72430713 (-)
FVB/NJ	ENSMUSG00205048120	lncRNA gene	Chr11:72265713-72268294 (-)
JF1/MsJ	ENSUMUG00000052403	lncRNA gene	Chr11:72818503-72821060 (-)
LP/J	ENSMUSG00230049468	lncRNA gene	Chr11:73458759-73461368 (-)
NOD/ShiLtJ	ENSMUSG00190047547	lncRNA gene	Chr11:72474524-72477133 (-)
NZO/HlLtJ	ENSMUSG00225039799	lncRNA gene	Chr11:75632107-75634715 (-)
PWK/PhJ	ENSLUMG00010026579	lncRNA gene	Chr11:72335711-72338264 (-)
SPRET/EiJ	ENSMSPG00010044838	lncRNA gene	Chr11:72734451-72736981 (-)
WSB/EiJ	ENSIUOG00005038207	lncRNA gene	Chr11:72326863-72329478 (-)

Homology

• Gene Tree
  Gm35117
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm35117
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  3

• Ensembl
  ENSMUSG00000120096 (Evidence)
• NCBI Gene
  102638588

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120096	Ensembl Gene Model | MGI Sequence Detail	2903	C57BL/6J
transcript	ENSMUST00000340342	Ensembl | MGI Sequence Detail	1009	Not Applicable

References

• Summaries
  All 11

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm35117:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr109165	Chr11:75188695-75188706 (-)	184 bp