Gm34793 Gene Detail

Summary

• Symbol
  Gm34793
• Name
  predicted gene, 34793

• Feature Type
  lncRNA gene
• IDs
  MGI:5593952
  NCBI Gene: 102638164
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:72837401-72838769 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593952	lncRNA gene	Chr11:72836951-72841105 (+)
129S1/SvImJ	ENSMUSG00200050038	lncRNA gene	Chr11:69879400-69883105 (+)
A/J	ENSMUSG00195052638	lncRNA gene	Chr11:69809288-69812969 (+)
AKR/J	ENSMUSG00220054163	lncRNA gene	Chr11:70055406-70059095 (+)
BALB/cJ	ENSMUSG00180053779	lncRNA gene	Chr11:69977054-69980737 (+)
C3H/HeJ	ENSMUSG00175054525	lncRNA gene	Chr11:69924303-69927986 (+)
C57BL/6NJ	ENSMUSG00215055180	lncRNA gene	Chr11:69607970-69611653 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053692	lncRNA gene	Chr11:69471323-69475002 (+)
CBA/J	ENSMUSG00210054353	lncRNA gene	Chr11:69778285-69781970 (+)
DBA/2J	ENSMUSG00185056783	lncRNA gene	Chr11:70059250-70062980 (+)
FVB/NJ	ENSMUSG00205054003	lncRNA gene	Chr11:69895593-69899280 (+)
JF1/MsJ	ENSUMUG00000057048	lncRNA gene	Chr11:70452484-70456214 (+)
LP/J	ENSMUSG00230049939	lncRNA gene	Chr11:71090418-71094117 (+)
NOD/ShiLtJ	ENSMUSG00190054235	lncRNA gene	Chr11:70051365-70055046 (+)
NZO/HlLtJ	ENSMUSG00225039731	lncRNA gene	Chr11:73274709-73278396 (+)
PWK/PhJ	ENSLUMG00010053633	lncRNA gene	Chr11:69935531-69939239 (+)
SPRET/EiJ	ENSMSPG00010049262	lncRNA gene	Chr11:70488317-70492050 (+)
WSB/EiJ	ENSIUOG00005052906	lncRNA gene	Chr11:70007268-70010951 (+)

Homology

• Gene Tree
  Gm34793
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm34793
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  1

• Ensembl
  ENSMUSG00000121254 (Evidence)
• NCBI Gene
  102638164

Representative Sequences			Length	Strain/Species
genomic	102638164	NCBI Gene Model | MGI Sequence Detail	1369	C57BL/6J
transcript	XR_389985	RefSeq | MGI Sequence Detail	572	C57BL/6J

References

• Summaries
  All 11

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm34793:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102860	Chr11:72837412-72837427 (+)	19 bp