Gm34726 Gene Detail

Summary

• Symbol
  Gm34726
• Name
  predicted gene, 34726

• Feature Type
  lncRNA gene
• IDs
  MGI:5593885
  NCBI Gene: 102638077
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:90010657-90021221 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  426 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593885	lncRNA gene	Chr11:89962396-90021580 (-)
129S1/SvImJ	ENSMUSG00200020673	lncRNA gene	Chr11:87121912-87131804 (-)
A/J	ENSMUSG00195009878	lncRNA gene	Chr11:86977036-86986926 (-)
AKR/J	ENSMUSG00220012507	lncRNA gene	Chr11:87176815-87186708 (-)
BALB/cJ	ENSMUSG00180012079	lncRNA gene	Chr11:87200731-87210668 (-)
C3H/HeJ	ENSMUSG00175033700	lncRNA gene	Chr11:87123323-87133215 (-)
C57BL/6NJ	ENSMUSG00215031684	lncRNA gene	Chr11:86821558-86831438 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017405	lncRNA gene	Chr11:86706005-86715843 (-)
CBA/J	ENSMUSG00210041829	lncRNA gene	Chr11:86940879-86950772 (-)
DBA/2J	ENSMUSG00185021044	lncRNA gene	Chr11:87257155-87267047 (-)
FVB/NJ	ENSMUSG00205024597	lncRNA gene	Chr11:87150606-87160538 (-)
JF1/MsJ	ENSUMUG00000029511	lncRNA gene	Chr11:87621859-87631734 (-)
LP/J	ENSMUSG00230030453	lncRNA gene	Chr11:88290670-88300562 (-)
NOD/ShiLtJ	ENSMUSG00190019981	lncRNA gene	Chr11:87302664-87312557 (-)
NZO/HlLtJ	ENSMUSG00225039909	lncRNA gene	Chr11:90418005-90427932 (-)
PWK/PhJ	ENSLUMG00010033649	lncRNA gene	Chr11:87148096-87157979 (-)
SPRET/EiJ	ENSMSPG00010029412	lncRNA gene	Chr11:87554898-87564777 (-)
WSB/EiJ	ENSIUOG00005008622	lncRNA gene	Chr11:87110029-87119967 (-)

Homology

• Gene Tree
  Gm34726
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm34726
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000121240 (Evidence)
• NCBI Gene
  102638077

Representative Sequences			Length	Strain/Species
genomic	102638077	NCBI Gene Model | MGI Sequence Detail	10565	C57BL/6J
transcript	XR_003949584	RefSeq | MGI Sequence Detail	2008	C57BL/6J

References

• Summaries
  All 11

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm34726:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr110082	Chr11:90021092-90021103 (-)	123 bp
Tssr110081	Chr11:90021061-90021084 (-)	148 bp
Tssr110080	Chr11:90012636-90012641 (-)	8,582 bp