Gm31005 Gene Detail

Summary

• Symbol
  Gm31005
• Name
  predicted gene, 31005

• Feature Type
  lncRNA gene
• IDs
  MGI:5590164
  NCBI Gene: 102633095
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr11:97192157-97206654 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  427 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590164	lncRNA gene	Chr11:97192137-97206684 (-)
129S1/SvImJ	ENSMUSG00200052994	lncRNA gene	Chr11:94439857-94447997 (-)
A/J	ENSMUSG00195052789	lncRNA gene	Chr11:94163689-94171601 (-)
AKR/J	ENSMUSG00220051835	lncRNA gene	Chr11:94422813-94430725 (-)
BALB/cJ	ENSMUSG00180052785	lncRNA gene	Chr11:94428406-94436319 (-)
C3H/HeJ	ENSMUSG00175053047	lncRNA gene	Chr11:94419928-94428068 (-)
C57BL/6NJ	ENSMUSG00215054381	lncRNA gene	Chr11:94010771-94018911 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051197	lncRNA gene	Chr11:93873216-93881152 (-)
CBA/J	ENSMUSG00210053592	lncRNA gene	Chr11:94125823-94133735 (-)
DBA/2J	ENSMUSG00185052943	lncRNA gene	Chr11:94469835-94477975 (-)
FVB/NJ	ENSMUSG00205049966	lncRNA gene	Chr11:94330653-94338565 (-)
JF1/MsJ	ENSUMUG00000056005	lncRNA gene	Chr11:94780112-94787568 (-)
LP/J	ENSMUSG00230050892	lncRNA gene	Chr11:95522834-95530974 (-)
NOD/ShiLtJ	ENSMUSG00190051807	lncRNA gene	Chr11:94514071-94522207 (-)
NZO/HlLtJ	ENSMUSG00225052392	lncRNA gene	Chr11:97577051-97584963 (-)
PWK/PhJ	ENSLUMG00010052307	lncRNA gene	Chr11:94323349-94331471 (-)
SPRET/EiJ	ENSMSPG00010050568	lncRNA gene	Chr11:94820430-94828350 (-)
WSB/EiJ	ENSIUOG00005051890	lncRNA gene	Chr11:94269451-94277595 (-)

Homology

• Gene Tree
  Gm31005
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  137
• Gene trapped
  136
• Targeted
  1
• Genomic Mutations
  1 involving Gm31005
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  4

• Ensembl
  ENSMUSG00000119952 (Evidence)
• NCBI Gene
  102633095

Representative Sequences			Length	Strain/Species
genomic	102633095	NCBI Gene Model | MGI Sequence Detail	14498	C57BL/6J
transcript	XR_001780314	RefSeq | MGI Sequence Detail	1635	C57BL/6J

References

• Summaries
  All 13

  Phenotypes 10
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm31005:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr110422	Chr11:97206448-97206460 (-)	200 bp
Tssr110421	Chr11:97201144-97201161 (-)	5,501 bp
Tssr110420	Chr11:97201116-97201133 (-)	5,529 bp
Tssr110419	Chr11:97201099-97201115 (-)	5,547 bp
Tssr110418	Chr11:97200853-97200886 (-)	5,784 bp
Tssr110417	Chr11:97200279-97200294 (-)	6,367 bp
Tssr110416	Chr11:97192558-97192562 (-)	14,094 bp