Gm30875 Gene Detail

Summary

• Symbol
  Gm30875
• Name
  predicted gene, 30875

• Feature Type
  lncRNA gene
• IDs
  MGI:5590034
  NCBI Gene: 102632924
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:79863821-79866015 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  207 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590034	lncRNA gene	Chr11:79863752-79866323 (+)
129S1/SvImJ	ENSMUSG00200052304	lncRNA gene	Chr11:76982087-76983583 (+)
A/J	ENSMUSG00195046277	lncRNA gene	Chr11:76860994-76862490 (+)
AKR/J	ENSMUSG00220048873	lncRNA gene	Chr11:77082721-77084217 (+)
BALB/cJ	ENSMUSG00180044218	lncRNA gene	Chr11:77043721-77045217 (+)
C3H/HeJ	ENSMUSG00175041229	lncRNA gene	Chr11:77025883-77027379 (+)
C57BL/6NJ	ENSMUSG00215043504	lncRNA gene	Chr11:76642948-76644444 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046238	lncRNA gene	Chr11:76538468-76539965 (+)
CBA/J	ENSMUSG00210046535	lncRNA gene	Chr11:76849533-76851029 (+)
DBA/2J	ENSMUSG00185040684	lncRNA gene	Chr11:77107410-77108906 (+)
FVB/NJ	ENSMUSG00205046651	lncRNA gene	Chr11:76933023-76934519 (+)
JF1/MsJ	ENSUMUG00000052614	lncRNA gene	Chr11:77486495-77487993 (+)
LP/J	ENSMUSG00230049831	lncRNA gene	Chr11:78137679-78139175 (+)
NOD/ShiLtJ	ENSMUSG00190048107	lncRNA gene	Chr11:77154347-77155843 (+)
NZO/HlLtJ	ENSMUSG00225040059	lncRNA gene	Chr11:80305240-80306736 (+)
PWK/PhJ	ENSLUMG00010025733	lncRNA gene	Chr11:77015225-77016725 (+)
SPRET/EiJ	ENSMSPG00010045436	lncRNA gene	Chr11:77401455-77402966 (+)
WSB/EiJ	ENSIUOG00005037401	lncRNA gene	Chr11:76989905-76991401 (+)

Homology

• Gene Tree
  Gm30875
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  8
• Chemically induced (other)
  1
• Gene trapped
  6
• Targeted
  1
• Genomic Mutations
  2 involving Gm30875
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  4

• Ensembl
  ENSMUSG00000120812 (Evidence)
• NCBI Gene
  102632924

Representative Sequences			Length	Strain/Species
genomic	102632924	NCBI Gene Model | MGI Sequence Detail	2195	C57BL/6J
transcript	XR_388887	RefSeq | MGI Sequence Detail	1688	C57BL/6J

References

• Summaries
  All 14

  Phenotypes 11
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm30875:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103471	Chr11:79864498-79864513 (+)	685 bp
Tssr103472	Chr11:79865028-79865076 (+)	1,231 bp