Gm29202 Gene Detail

Summary

• Symbol
  Gm29202
• Name
  predicted gene 29202

• Feature Type
  lncRNA gene
• IDs
  MGI:5579908
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:95895647-95899525 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579908	lncRNA gene	Chr11:95895647-95899525 (+)
129S1/SvImJ	ENSMUSG00200053660	lncRNA gene	Chr11:93141048-93143214 (+)
A/J	ENSMUSG00195052429	lncRNA gene	Chr11:92863229-92865393 (+)
AKR/J	ENSMUSG00220051725	lncRNA gene	Chr11:93122269-93124433 (+)
BALB/cJ	ENSMUSG00180052265	lncRNA gene	Chr11:93124399-93126565 (+)
C3H/HeJ	ENSMUSG00175052523	lncRNA gene	Chr11:93122518-93124681 (+)
C57BL/6NJ	ENSMUSG00215054169	lncRNA gene	Chr11:92714174-92716343 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002688	antisense lncRNA gene	Chr11:91770847-91773015 (+)
CAST/EiJ	ENSTCUG00005051741	lncRNA gene	Chr11:92567280-92569456 (+)
CBA/J	ENSMUSG00210053798	lncRNA gene	Chr11:92825803-92827967 (+)
DBA/2J	ENSMUSG00185051901	lncRNA gene	Chr11:93171017-93173183 (+)
FVB/NJ	ENSMUSG00205049369	lncRNA gene	Chr11:93028110-93030276 (+)
JF1/MsJ	ENSUMUG00000055646	lncRNA gene	Chr11:93478278-93480441 (+)
LP/J	ENSMUSG00230051409	lncRNA gene	Chr11:94224176-94226343 (+)
NOD/ShiLtJ	ENSMUSG00190052263	lncRNA gene	Chr11:93218095-93220260 (+)
NZO/HlLtJ	ENSMUSG00225053294	lncRNA gene	Chr11:96279390-96281556 (+)
PWK/PhJ	ENSLUMG00010051545	lncRNA gene	Chr11:93023619-93025784 (+)
SPRET/EiJ	ENSMSPG00010050708	lncRNA gene	Chr11:93513629-93515800 (+)
WSB/EiJ	ENSIUOG00005051818	lncRNA gene	Chr11:92967451-92969616 (+)

Homology

• Gene Tree
  Gm29202
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  80
• Gene trapped
  79
• Targeted
  1
• Genomic Mutations
  1 involving Gm29202
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000099928 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099928	Ensembl Gene Model | MGI Sequence Detail	3879	C57BL/6J
transcript	ENSMUST00000316078	Ensembl | MGI Sequence Detail	1650	Not Applicable

References

• Summaries
  All 12

  Phenotypes 9
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm29202:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104420	Chr11:95898148-95898169 (+)	2,512 bp