Mir6338 Gene Detail

Summary

• Symbol
  Mir6338
• Name
  microRNA 6338
• Synonyms
  mmu-mir-6338

• Feature Type
  miRNA gene
• IDs
  MGI:5531060
  NCBI Gene: 102465172
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:72279582-72279690 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5531060	miRNA gene	Chr11:72279582-72279690 (+)
129S1/SvImJ	ENSMUSG00200049823	miRNA gene	Chr11:69319058-69319166 (+)
A/J	ENSMUSG00195052857	miRNA gene	Chr11:69250785-69250893 (+)
AKR/J	ENSMUSG00220054167	miRNA gene	Chr11:69497523-69497631 (+)
BALB/cJ	ENSMUSG00180053977	miRNA gene	Chr11:69419202-69419310 (+)
C3H/HeJ	ENSMUSG00175054528	miRNA gene	Chr11:69366498-69366606 (+)
C57BL/6NJ	ENSMUSG00215055056	miRNA gene	Chr11:69050124-69050232 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007131	miRNA gene	Chr11:67115151-67115259 (+)
CAST/EiJ	ENSTCUG00005053698	miRNA gene	Chr11:68906008-68906116 (+)
CBA/J	ENSMUSG00210054426	miRNA gene	Chr11:69220491-69220599 (+)
DBA/2J	ENSMUSG00185056740	miRNA gene	Chr11:69495125-69495233 (+)
FVB/NJ	ENSMUSG00205054012	miRNA gene	Chr11:69337757-69337865 (+)
JF1/MsJ	ENSUMUG00000057133	miRNA gene	Chr11:69893895-69894003 (+)
LP/J	ENSMUSG00230053782	miRNA gene	Chr11:70530075-70530183 (+)
NOD/ShiLtJ	ENSMUSG00190054275	miRNA gene	Chr11:69493553-69493661 (+)
NZO/HlLtJ	ENSMUSG00225039572	miRNA gene	Chr11:72712911-72713019 (+)
PWK/PhJ	ENSLUMG00010053541	miRNA gene	Chr11:69370576-69370684 (+)
SPRET/EiJ	ENSMSPG00010049360	miRNA gene	Chr11:69939268-69939376 (+)
WSB/EiJ	ENSIUOG00005052708	miRNA gene	Chr11:69449191-69449299 (+)

Homology

• Gene Tree
  Mir6338
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Mir6338
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000098658 (Evidence)
• NCBI Gene
  102465172

Representative Sequences			Length	Strain/Species
genomic	102465172	NCBI Gene Model | MGI Sequence Detail	109	C57BL/6J
transcript	NR_105756	RefSeq | MGI Sequence Detail	109	ZRU/MplStud

Other Database
Links

miRBase

MI0021866

References

• Summaries
  All 13

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52